Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020014.1

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 535

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgagtggagggaaaaagcaaaggattcagctggctcgagctgtctatagtgatgctgatatctacctcctagatgacccattcagtgcagtagatgcacacactgcagcaattctgtttcatgattgtgtcatggatgctctagcaaagaagactgtgattcttgtgactcatcaagtagaatttctgtcagaagttgacaaaattctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

70

Amino Acids

7.75

Weight (kDa)

5.36

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	182, 204
AluBI	AGCT	2 cut(s)	31, 41
AluI	AGCT	2 cut(s)	31, 41
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	182, 204
AvaI	CYCGRG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	71, 143
BfmI	CTRYAG	2 cut(s)	46, 105
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	43, 85, 127
BpiI	GAAGAC	1 cut(s)	158
BseGI	GGATG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	2 cut(s)	95, 104
BstC8I	GCNNGC	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 104
BstSFI	CTRYAG	2 cut(s)	46, 105
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	91, 102
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	2 cut(s)	122, 133
CviJI	RGCY	3 cut(s)	31, 35, 41
CviKI_1	RGCY	3 cut(s)	31, 35, 41
Eco32I	GATATC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	2 cut(s)	125, 136
FaiI	YATR	3 cut(s)	48, 123, 134
FatI	CATG	2 cut(s)	121, 132
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	71, 143
FspEI	CC	7 cut(s)	7, 17, 80, 83, 92, 93, 119
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	125, 136
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	25, 160, 169
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	89, 98, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 104
Hsp92II	CATG	2 cut(s)	125, 136
LpnPI	CCDG	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	3 cut(s)	43, 85, 127
MaeI	CTAG	2 cut(s)	71, 143
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	163
MluCI	AATT	3 cut(s)	111, 182, 204
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	95, 104
NlaIII	CATG	2 cut(s)	125, 136
NmuCI	GTSAC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	36
PagI	TCATGA	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	25, 160
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	163
SetI	ASST	3 cut(s)	33, 43, 69
SfaNI	GCATC	3 cut(s)	43, 85, 127
SfcI	CTRYAG	2 cut(s)	46, 105
Sfr274I	CTCGAG	1 cut(s)	36
SgeI	CNNG	9 cut(s)	44, 48, 50, 83, 134, 145, 155, 176, 188
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	111, 182, 204
SspMI	CTAG	2 cut(s)	71, 143
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	111, 182, 204
TfiI	GAWTC	2 cut(s)	25, 160
TscAI	CASTG	2 cut(s)	91, 109
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	91, 109
XapI	RAATTY	2 cut(s)	182, 204
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	2 cut(s)	71, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.