Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

30448485 .. 30450641

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGAGACCTCGCCGTTACTTCCAAGGAGGGCCCCAAGCTCCCCATTCCCGGCCAACGCAACGTCCTCATCACCAGCGCACTGCCGTACGTCAACAACGTCCCTCATCGGCTGCGACGTACTATGCGATTCATCGGCAGGTGTATGAGTGGTTCAATATTAGTTTTGACAAATTCGGGCGAACTTGGACGCCGCCGGAGCAGACTGAGGTGTGCCAATAGGCTGCTGGAGAATAATTGGCTTTCTGAGAACACAATGCAGCAGCTATATTGTGACACTTGCACACAGTTTTTAGCCGACAGGCTCGTGGAGGGGACGTGCCCAACTCAAGCTTGTGATTATACCTCTGCAAGAGGAGATCAGAATGAGAACTGTGGGAAGCTTTTAAACCCCACAGAATTAAAAGATCCCAAGTGCAAGGTGCGGAGATTTTGTGTATCCTTTACTTTTTTGAAACTTACGTTACATGCCATAGATTTTCATACAGTAGAGTTTCTGGCATCAGGGAGGATACATGCAAATGAGTTTGATGTGTTGGATTGTAGCAGTGGAAGACTAAAGAAAACCATTTGGAAGCTCTTAAATGCCCCTGATGGTGAGTGGAATTCCGTATCTTCGAGCCACATTGAAGAAGGTATAAAATCAAGCAGTGCCCATTGCATCTCATACTTAATCAAGGATCCTAGTAAGGCAAGGAAAGTTGATGATTTAAGACAGAAACTCAGGATGCGGGGACTACGCTGCCATCCAATGTACTGCAGAAGCTCAACGCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGAGCACTGGTCACCATTGTAAATGGGCAAGCTCCAACAGCTGATGAGATTGCCACTGCTCTGAAGCAAGTCACCAAATCTACTTCTCTGGAATGTGATTACGTGATGCGACTTGAATGTGGATTTATGTACCTTTTGAGAAGAAACGAGGCCTCCATCAAGAATAAAGGCGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

331

Amino Acids

37.23

Weight (kDa)

9.46

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	72 - 142	3.5e-18	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	129
AccII	CGCG	1 cut(s)	772
AciI	CCGC	4 cut(s)	193, 424, 730, 987
AclWI	GGATC	3 cut(s)	401, 674, 687
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	172, 604
AcuI	CTGAAG	1 cut(s)	899
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	4 cut(s)	89, 121, 755, 947
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	156, 454, 629, 932
AjiI	CACGTC	1 cut(s)	318
AluBI	AGCT	8 cut(s)	40, 265, 332, 382, 577, 765, 848, 857
AluI	AGCT	8 cut(s)	40, 265, 332, 382, 577, 765, 848, 857
Alw21I	GWGCWC	2 cut(s)	808, 823
AlwI	GGATC	3 cut(s)	401, 674, 687
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	3 cut(s)	31, 52, 966
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	5 cut(s)	112, 223, 259, 262, 741
ApoI	RAATTY	2 cut(s)	172, 604
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	31, 32
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	4 cut(s)	64, 608, 820, 880
AvaI	CYCGRG	1 cut(s)	801
BaeGI	GKGCMC	3 cut(s)	35, 323, 655
BamHI	GGATCC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	2 cut(s)	808, 823
BbvI	GCAGC	5 cut(s)	99, 210, 271, 274, 728
BccI	CCATC	3 cut(s)	587, 753, 980
BceAI	ACGGC	1 cut(s)	70
BciVI	GTATCC	2 cut(s)	448, 504
BcnI	CCSGG	1 cut(s)	51
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	757
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	2 cut(s)	448, 504
BisI	GCNGC	6 cut(s)	113, 193, 224, 260, 263, 742
BlsI	GCNGC	6 cut(s)	114, 194, 225, 261, 264, 743
Bme1390I	CCNGG	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	801
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	31, 32
BmiI	GGNNCC	3 cut(s)	33, 34, 681
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	4 cut(s)	509, 669, 717, 912
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	919
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	6 cut(s)	302, 332, 418, 448, 953, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	655
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	732, 745
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	4 cut(s)	197, 237, 736, 829
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	3 cut(s)	35, 323, 655
BseXI	GCAGC	5 cut(s)	99, 210, 271, 274, 728
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	3 cut(s)	33, 54, 968
BsiHKAI	GWGCWC	2 cut(s)	808, 823
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	51, 196
BsiWI	CGTACG	1 cut(s)	87
BslFI	GGGAC	3 cut(s)	86, 328, 747
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	3 cut(s)	86, 328, 747
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	3 cut(s)	33, 54, 968
BsoBI	CYCGRG	1 cut(s)	801
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	5 cut(s)	35, 323, 655, 808, 823
Bsp143I	GATC	3 cut(s)	358, 406, 679
BspACI	CCGC	4 cut(s)	193, 424, 730, 987
BspANI	GGCC	3 cut(s)	33, 54, 968
BspCNI	CTCAG	4 cut(s)	198, 238, 735, 828
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	33, 34, 681
BspMAI	CTGCAG	1 cut(s)	761
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	401, 674, 687
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	828
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	358, 406, 679
BssNI	GRCGYC	1 cut(s)	190
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	288, 374, 487
BstACI	GRCGYC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	919
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	4 cut(s)	206, 246, 722, 815
BstEII	GGTNACC	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	732, 745
BstFNI	CGCG	1 cut(s)	772
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	361, 409, 682
BstMBI	GATC	3 cut(s)	358, 406, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 803, 818, 854
BstNSI	RCATGY	2 cut(s)	470, 518
BstPI	GGTNACC	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	757
BstSLI	GKGCMC	3 cut(s)	35, 323, 655
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	5 cut(s)	99, 210, 271, 274, 728
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	406, 679
BstYI	RGATCY	2 cut(s)	406, 679
BsuI	GTATCC	2 cut(s)	448, 504
BsuRI	GGCC	3 cut(s)	33, 54, 968
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	732, 745
BtsI	GCAGTG	4 cut(s)	80, 553, 655, 870
BtsIMutI	CAGTG	5 cut(s)	80, 553, 655, 821, 870
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	846
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	31, 32
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	88, 120, 754, 946
CviAII	CATG	2 cut(s)	467, 515
CviQI	GTAC	4 cut(s)	88, 120, 754, 946
DdeI	CTNAG	4 cut(s)	206, 246, 722, 815
DpnI	GATC	3 cut(s)	360, 408, 681
DpnII	GATC	3 cut(s)	358, 406, 679
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	826
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoO65I	GGTNACC	1 cut(s)	826
EcoRI	GAATTC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	470, 518
FaqI	GGGAC	3 cut(s)	86, 328, 747
FatI	CATG	2 cut(s)	466, 514
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	6 cut(s)	113, 193, 224, 260, 263, 742
FokI	GGATG	2 cut(s)	732, 739
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	6 cut(s)	113, 193, 224, 260, 263, 742
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	113, 193, 224, 260, 263, 742
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	33, 54, 968
HapII	CCGG	2 cut(s)	51, 196
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	470, 518
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	330, 380
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	51, 196
HphI	GGTGA	4 cut(s)	64, 608, 820, 880
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	247, 363, 818, 879
Hpy188III	TCNNGA	4 cut(s)	724, 801, 905, 976
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	626
HpyCH4III	ACNGT	3 cut(s)	288, 374, 487
HpyCH4IV	ACGT	7 cut(s)	63, 90, 99, 118, 317, 461, 918
HpyCH4V	TGCA	8 cut(s)	259, 282, 350, 417, 518, 660, 759, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 803, 818, 854
HpyF3I	CTNAG	4 cut(s)	206, 246, 722, 815
HpySE526I	ACGT	7 cut(s)	63, 90, 99, 118, 317, 461, 918
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	470, 518
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	358, 406, 679
LmnI	GCTCC	3 cut(s)	45, 198, 853
Lsp1109I	GCAGC	5 cut(s)	99, 210, 271, 274, 728
LweI	GCATC	4 cut(s)	509, 669, 717, 912
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	7 cut(s)	63, 90, 99, 118, 317, 461, 918
MaeIII	GTNAC	5 cut(s)	16, 272, 462, 826, 886
MalI	GATC	3 cut(s)	360, 408, 681
MboI	GATC	3 cut(s)	358, 406, 679
MboII	GAAGA	4 cut(s)	564, 606, 641, 969
MflI	RGATCY	2 cut(s)	406, 679
MhlI	GDGCHC	5 cut(s)	35, 323, 655, 808, 823
MluCI	AATT	5 cut(s)	172, 235, 398, 604, 780
MmeI	TCCRAC	2 cut(s)	516, 875
MseI	TTAA	5 cut(s)	386, 401, 581, 671, 710
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	2 cut(s)	51, 196
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	780
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	4 cut(s)	198, 803, 818, 854
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	358, 406, 679
NlaIII	CATG	2 cut(s)	470, 518
NlaIV	GGNNCC	3 cut(s)	33, 34, 681
NmuCI	GTSAC	3 cut(s)	272, 826, 886
NspI	RCATGY	2 cut(s)	470, 518
PaeR7I	CTCGAG	1 cut(s)	801
PaqCI	CACCTGC	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	968
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 115, 124
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	129
Pfl23II	CGTACG	1 cut(s)	87
PkrI	GCNGC	6 cut(s)	114, 194, 225, 261, 264, 743
Ppu21I	YACGTR	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	826
PspLI	CGTACG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	33, 34, 681
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	31, 32
PsrI	GAACNNNNNNTAC	2 cut(s)	136, 168
PstI	CTGCAG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	406, 679
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	4 cut(s)	89, 121, 755, 947
RsaNI	GTAC	4 cut(s)	88, 120, 754, 946
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	5 cut(s)	386, 401, 581, 671, 710
SatI	GCNGC	6 cut(s)	113, 193, 224, 260, 263, 742
Sau3AI	GATC	3 cut(s)	358, 406, 679
Sau96I	GGNCC	2 cut(s)	31, 32
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	5 cut(s)	35, 323, 655, 808, 823
SfaNI	GCATC	4 cut(s)	509, 669, 717, 912
SfcI	CTRYAG	1 cut(s)	757
Sfr274I	CTCGAG	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	327, 801
SmoI	CTYRAG	2 cut(s)	327, 801
Sse9I	AATT	5 cut(s)	172, 235, 398, 604, 780
SseBI	AGGCCT	1 cut(s)	968
SsiI	CCGC	4 cut(s)	193, 424, 730, 987
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	968
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	288, 374, 487
TaiI	ACGT	7 cut(s)	66, 93, 102, 121, 320, 464, 921
TaqI	TCGA	2 cut(s)	617, 802
TasI	AATT	5 cut(s)	172, 235, 398, 604, 780
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	5 cut(s)	386, 401, 581, 671, 710
Tru9I	TTAA	5 cut(s)	386, 401, 581, 671, 710
TscAI	CASTG	5 cut(s)	87, 553, 655, 828, 877
TseFI	GTSAC	3 cut(s)	272, 826, 886
TseI	GCWGC	5 cut(s)	112, 223, 259, 262, 741
Tsp45I	GTSAC	3 cut(s)	272, 826, 886
TspDTI	ATGAA	2 cut(s)	121, 470
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	5 cut(s)	87, 553, 655, 828, 877
XapI	RAATTY	2 cut(s)	172, 604
XceI	RCATGY	2 cut(s)	470, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	801
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.