Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

22244141 .. 22265851

Gene Structure 21711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTGGCTCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTCAGTGCAGTAGATGCACACACTGCAGCAATTCTATTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTATGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGCTGCTCATGGAAGTATGGCGCTTGAAGCTTGCAACTGCATCGCATCATCTTTCATGAGTTCTTGGGGTGAGCTCTCTGTTCATACTCCTTTTGTAGTAAAAAATAACATTGATGTAAGGAAGCCAAAGAGTTATGAAGACAAGTACCTGATGTTAGTGAATACTGAAAGCTCTGACAAACAGTCTCACCGTCTGTATGAAAATGAGAACCAAAATAGCAATGCTAACCTCGGCGTTTCACCATTTCTGCAACTCTCAAGTCTCAAGTGTGAAGATTCTGAATATGAGGGTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

4.93

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 28	2.1e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	182, 204
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	236
AhdI	GACNNNNNGTC	1 cut(s)	391
AluBI	AGCT	5 cut(s)	31, 41, 239, 283, 381
AluI	AGCT	5 cut(s)	31, 41, 239, 283, 381
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	399, 476
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	107, 212
ApoI	RAATTY	2 cut(s)	182, 204
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	290, 389, 441
AvaI	CYCGRG	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	158, 354
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	119, 199
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BcoDI	GTCTC	2 cut(s)	399, 476
BfaI	CTAG	2 cut(s)	71, 143
BfmI	CTRYAG	2 cut(s)	46, 105
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	2 cut(s)	108, 213
BlsI	GCNGC	2 cut(s)	109, 214
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	36
BmsI	GCATC	5 cut(s)	43, 85, 127, 258, 263
BpiI	GAAGAC	2 cut(s)	158, 354
BpuEI	CTTGAG	2 cut(s)	451, 458
BsaJI	CCNNGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	119, 199
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	399, 476
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	121, 264
BspMAI	CTGCAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	393, 401
BstAPI	GCANNNNNTGC	2 cut(s)	95, 104
BstC8I	GCNNGC	2 cut(s)	33, 241
BstF5I	GGATG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	399, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 104, 236
BstSFI	CTRYAG	2 cut(s)	46, 105
BstV1I	GCAGC	2 cut(s)	119, 199
BstV2I	GAAGAC	2 cut(s)	158, 354
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	91, 102
Cac8I	GCNNGC	2 cut(s)	33, 241
CciI	TCATGA	2 cut(s)	121, 264
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	122, 133, 218, 265
CviJI	RGCY	8 cut(s)	31, 35, 41, 212, 239, 283, 334, 381
CviKI_1	RGCY	8 cut(s)	31, 35, 41, 212, 239, 283, 334, 381
CviQI	GTAC	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	391
Eam1105I	GACNNNNNGTC	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	4 cut(s)	125, 136, 221, 268
FatI	CATG	4 cut(s)	121, 132, 217, 264
Fnu4HI	GCNGC	2 cut(s)	108, 213
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	108, 213
FspBI	CTAG	2 cut(s)	71, 143
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	108, 213
HaeII	RGCGCY	1 cut(s)	233
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	125, 136, 221, 268
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	4 cut(s)	25, 160, 169, 485
HphI	GGTGA	3 cut(s)	290, 389, 441
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	193, 385, 490, 505
Hpy188III	TCNNGA	2 cut(s)	122, 265
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	393, 401
HpyCH4V	TGCA	6 cut(s)	89, 98, 107, 243, 249, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 104, 236
Hsp92II	CATG	4 cut(s)	125, 136, 221, 268
HspAI	GCGC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	17, 194, 371
Lsp1109I	GCAGC	2 cut(s)	119, 199
LweI	GCATC	5 cut(s)	43, 85, 127, 258, 263
MaeI	CTAG	2 cut(s)	71, 143
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	163, 359, 494
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	111, 182, 204
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	77, 449, 490
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	95, 104, 236
NlaIII	CATG	4 cut(s)	125, 136, 221, 268
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	36
PagI	TCATGA	2 cut(s)	121, 264
PfeI	GAWTC	3 cut(s)	25, 160, 485
PkrI	GCNGC	2 cut(s)	109, 214
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	285
PspXI	VCTCGAGB	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	2 cut(s)	108, 213
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	8 cut(s)	33, 43, 69, 241, 285, 360, 383, 441
SfaNI	GCATC	5 cut(s)	43, 85, 127, 258, 263
SfcI	CTRYAG	2 cut(s)	46, 105
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	3 cut(s)	36, 466, 473
SmoI	CTYRAG	3 cut(s)	36, 466, 473
Sse9I	AATT	3 cut(s)	111, 182, 204
SspMI	CTAG	2 cut(s)	71, 143
SstI	GAGCTC	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	393, 401
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	111, 182, 204
TfiI	GAWTC	3 cut(s)	25, 160, 485
TscAI	CASTG	2 cut(s)	91, 109
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	107, 212
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	110, 253, 281, 360, 423
TspRI	CASTG	2 cut(s)	91, 109
XapI	RAATTY	2 cut(s)	182, 204
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	2 cut(s)	71, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.