Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

22265902 .. 22266752

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATGGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAACCTAGGAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCGGTTGGTATCCTGCATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGATAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGATCATAAAAGCTTGTGCTTTGGTAAGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

253

Amino Acids

28.36

Weight (kDa)

9.07

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	165 - 245	3.4e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	34, 328
AcsI	RAATTY	4 cut(s)	86, 122, 424, 603
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	91, 127, 232, 391, 488
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	6 cut(s)	275, 412, 438, 557, 614, 740
AluI	AGCT	6 cut(s)	275, 412, 438, 557, 614, 740
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	34, 328
AlwNI	CAGNNNCTG	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	86, 122, 424, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspA2I	CCTAGG	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	177, 411
AvaII	GGWCC	1 cut(s)	545
AvrII	CCTAGG	1 cut(s)	149
BccI	CCATC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	3 cut(s)	233, 480, 654
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	150, 215, 509
BfuI	GTATCC	3 cut(s)	233, 480, 654
BlnI	CCTAGG	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	485, 585
BpuEI	CTTGAG	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	75, 149
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	182, 548
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	75, 149
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	27, 129
BseNI	ACTGG	2 cut(s)	182, 548
BslFI	GGGAC	2 cut(s)	156, 224
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	156, 224
BsmI	GAATGC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	352
Bsp143I	GATC	5 cut(s)	39, 57, 333, 355, 729
BspCNI	CTCAG	2 cut(s)	28, 130
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	34, 328
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	182, 548
BssECI	CCNNGG	2 cut(s)	75, 149
BssMI	GATC	5 cut(s)	39, 57, 333, 355, 729
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	50, 268
Bst6I	CTCTTC	2 cut(s)	75, 205
BstDEI	CTNAG	4 cut(s)	23, 36, 138, 281
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	42, 60, 336, 358, 732
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	5 cut(s)	39, 57, 333, 355, 729
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuI	GTATCC	3 cut(s)	233, 480, 654
BtsCI	GGATG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	4 cut(s)	23, 36, 138, 281
DpnI	GATC	5 cut(s)	41, 59, 335, 357, 731
DpnII	GATC	5 cut(s)	39, 57, 333, 355, 729
Eam1104I	CTCTTC	2 cut(s)	75, 205
EarI	CTCTTC	2 cut(s)	75, 205
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	2 cut(s)	156, 224
FatI	CATG	1 cut(s)	288
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	3 cut(s)	150, 215, 509
Hin1II	CATG	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	738
HphI	GGTGA	2 cut(s)	177, 411
Hpy166II	GTNNAC	2 cut(s)	505, 545
Hpy188I	TCNGA	5 cut(s)	37, 139, 246, 430, 495
Hpy188III	TCNNGA	3 cut(s)	113, 609, 680
Hpy8I	GTNNAC	2 cut(s)	505, 545
HpyAV	CCTTC	2 cut(s)	119, 148
HpyCH4III	ACNGT	2 cut(s)	50, 268
HpyCH4V	TGCA	3 cut(s)	251, 476, 536
HpyF3I	CTNAG	4 cut(s)	23, 36, 138, 281
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	39, 57, 333, 355, 729
LmnI	GCTCC	4 cut(s)	285, 417, 554, 611
LpnPI	CCDG	9 cut(s)	61, 88, 163, 312, 327, 486, 543, 561, 594
LweI	GCATC	2 cut(s)	485, 585
MaeI	CTAG	3 cut(s)	150, 215, 509
MaeIII	GTNAC	2 cut(s)	66, 183
MalI	GATC	5 cut(s)	41, 59, 335, 357, 731
MboI	GATC	5 cut(s)	39, 57, 333, 355, 729
MboII	GAAGA	4 cut(s)	67, 92, 192, 739
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	7 cut(s)	86, 103, 122, 424, 483, 531, 603
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	12, 133, 252, 310
MseI	TTAA	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	39, 57, 333, 355, 729
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	5 cut(s)	39, 57, 333, 355, 729
Sau96I	GGNCC	1 cut(s)	545
ScaI	AGTACT	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	76
SfaNI	GCATC	2 cut(s)	485, 585
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	7 cut(s)	86, 103, 122, 424, 483, 531, 603
SspMI	CTAG	3 cut(s)	150, 215, 509
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	50, 268
TaqI	TCGA	2 cut(s)	112, 618
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	7 cut(s)	86, 103, 122, 424, 483, 531, 603
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	4 cut(s)	86, 122, 424, 603
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	3 cut(s)	150, 215, 509
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.