Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

44310512 .. 44317144

Gene Structure 6633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTTGGATTTGGGTTTGAGCTGTTTCGAAGTGTTGTGGTAATTCGATTAAATTTTTGGGAGGCGTGGAACAACAGCAACCCGAAAGGTGTCATGCTCACTCATCGAAATTTATTACATCGGATAAGAAACCTACGGGATGTTGTACCTGCTGAAATTGGGGACAGATTTCTTAGTATGCTTCCACCATGGCATGCCTATGAACGAGCTGCTGAGTATTTCACATTTACATATGGAATTGAACAAGTATACACAAGCGTGAAGAACTTGAAGGATGATCTGCGACATTATCAACCAAATTATGTCGTTTCGGTTCCTTTAGTGTATGAGACACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

112

Amino Acids

13.29

Weight (kDa)

8.06

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	27 - 112	1.5e-14	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	52, 109
AfaI	GTAC	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	242, 271
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	22, 209
AluI	AGCT	2 cut(s)	22, 209
Alw26I	GTCTC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	52, 109
AsuII	TTCGAA	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	145, 280
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	277
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	188
Bst1107I	GTATAC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	173, 213
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	145, 280
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	145, 280
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	94, 189, 194
CviJI	RGCY	2 cut(s)	22, 209
CviKI_1	RGCY	2 cut(s)	22, 209
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	173, 213
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	97, 192, 197
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	93, 188, 193
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	2 cut(s)	152, 287
Fsp4HI	GCNGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	97, 192, 197
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	123
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	173, 213
Hsp92II	CATG	3 cut(s)	97, 192, 197
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	1 cut(s)	162
Lsp1109I	GCAGC	1 cut(s)	196
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	274
MluCI	AATT	6 cut(s)	42, 52, 109, 156, 237, 298
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	2 cut(s)	50, 337
MslI	CAYNNNNRTG	2 cut(s)	198, 257
NcoI	CCATGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	97, 192, 197
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	198, 257
SaqAI	TTAA	2 cut(s)	50, 337
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	277
SetI	ASST	5 cut(s)	24, 91, 135, 151, 211
SfuI	TTCGAA	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	198, 257
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	6 cut(s)	42, 52, 109, 156, 237, 298
StyI	CCWWGG	1 cut(s)	188
TaqI	TCGA	3 cut(s)	28, 46, 106
TasI	AATT	6 cut(s)	42, 52, 109, 156, 237, 298
Tru1I	TTAA	2 cut(s)	50, 337
Tru9I	TTAA	2 cut(s)	50, 337
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	216
XapI	RAATTY	2 cut(s)	52, 109
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.