Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

63957654 .. 63966070

Gene Structure 8417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG430900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCGGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGTAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGATTGTGTCATGGATGCTCTAGCAAAGAAGACTATGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGGTGCTTGTGTGGAAGTCCTCTTAACAAGGTCTTTTCATGGTTCTGGTGTTGAGGTTCGAATGGGAAGTCTGCAGTGCATTCGTTATGGCATCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

170

Amino Acids

18.65

Weight (kDa)

5.27

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	4 cut(s)	136, 315, 386, 408
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	103, 200
AluBI	AGCT	4 cut(s)	124, 150, 269, 326
AluI	AGCT	4 cut(s)	124, 150, 269, 326
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	326
ApoI	RAATTY	4 cut(s)	136, 315, 386, 408
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	362
BccI	CCATC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	221, 347
BfmI	CTRYAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	297, 331
BpiI	GAAGAC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	64
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	45, 67
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	45, 67
BstBI	TTCGAA	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	48, 70
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	45, 67
BstSFI	CTRYAG	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	494
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	2 cut(s)	337, 452
CviJI	RGCY	6 cut(s)	32, 73, 124, 150, 269, 326
CviKI_1	RGCY	6 cut(s)	32, 73, 124, 150, 269, 326
DpnI	GATC	2 cut(s)	47, 69
DpnII	GATC	2 cut(s)	45, 67
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	257
FaeI	CATG	2 cut(s)	340, 455
FaiI	YATR	5 cut(s)	296, 338, 362, 453, 501
FatI	CATG	2 cut(s)	336, 451
FokI	GGATG	1 cut(s)	353
FspBI	CTAG	2 cut(s)	221, 347
Hin1II	CATG	2 cut(s)	340, 455
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	188, 364, 373
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	3 cut(s)	217, 257, 403
Hpy188I	TCNGA	3 cut(s)	142, 207, 397
Hpy188III	TCNNGA	2 cut(s)	185, 321
Hpy8I	GTNNAC	3 cut(s)	217, 257, 403
HpyCH4V	TGCA	3 cut(s)	248, 487, 492
Hsp92II	CATG	2 cut(s)	340, 455
Kzo9I	GATC	2 cut(s)	45, 67
LmnI	GCTCC	2 cut(s)	129, 323
LpnPI	CCDG	8 cut(s)	24, 39, 198, 255, 273, 306, 398, 444
LweI	GCATC	2 cut(s)	297, 331
MaeI	CTAG	2 cut(s)	221, 347
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	2 cut(s)	47, 69
MboI	GATC	2 cut(s)	45, 67
MboII	GAAGA	1 cut(s)	367
MluCI	AATT	6 cut(s)	136, 195, 243, 315, 386, 408
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	3 cut(s)	22, 443, 460
MseI	TTAA	2 cut(s)	437, 511
Mva1269I	GAATGC	1 cut(s)	492
NdeII	GATC	2 cut(s)	45, 67
NlaIII	CATG	2 cut(s)	340, 455
NmuCI	GTSAC	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	472
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	188, 364
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	437, 511
Sau3AI	GATC	2 cut(s)	45, 67
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	367
SetI	ASST	9 cut(s)	13, 60, 126, 152, 222, 271, 328, 446, 471
SfaNI	GCATC	2 cut(s)	297, 331
SfcI	CTRYAG	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	6 cut(s)	136, 195, 243, 315, 386, 408
SspMI	CTAG	2 cut(s)	221, 347
TaqI	TCGA	1 cut(s)	472
TasI	AATT	6 cut(s)	136, 195, 243, 315, 386, 408
TfiI	GAWTC	2 cut(s)	188, 364
Tru1I	TTAA	2 cut(s)	437, 511
Tru9I	TTAA	2 cut(s)	437, 511
TscAI	CASTG	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	4 cut(s)	136, 315, 386, 408
XspI	CTAG	2 cut(s)	221, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.