Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Forward (+)

62244021 .. 62244329

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0449400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGTCGTGACGTGGCGGCGATGGTGAGGGACGACGAGGTTGTCGACATTGTGGGGAAGGAGGACGTGGAGCGGAACAAGGGGTACCCGAAGTTGGGGGTCGGGTCGTGCAAGGTCGGGGCGGCGATAGGGACGAGGGAGTCGGATAAGGAGAGATTGGAGGAGTTGGTGAAGGCTGGGATTGATGTGGTAGTTTTGGATAGCTCACAGGGAACTCCATTTATCAGATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

102

Amino Acids

11.17

Weight (kDa)

4.88

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	58 - 96	1.8e-08	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 211
Acc65I	GGTACC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	4 cut(s)	68, 89, 145, 194
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	45, 166, 167
AjiI	CACGTC	2 cut(s)	85, 139
AluBI	AGCT	3 cut(s)	9, 36, 276
AluI	AGCT	3 cut(s)	9, 36, 276
Alw21I	GWGCWC	1 cut(s)	38
Asp718I	GGTACC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	109, 253
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	90, 195
BlsI	GCNGC	2 cut(s)	91, 196
BmgBI	CACGTC	2 cut(s)	85, 139
BmiI	GGNNCC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 166, 167
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	45, 166, 167
BseRI	GAGGAG	2 cut(s)	71, 248
BseYI	CCCAGC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	116, 217
BslI	CCNNNNNNNGG	3 cut(s)	45, 166, 167
BsmFI	GGGAC	2 cut(s)	116, 217
Bsp1286I	GDGCHC	1 cut(s)	38
BspACI	CCGC	4 cut(s)	68, 89, 145, 194
BspLI	GGNNCC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	107
BtrI	CACGTC	2 cut(s)	85, 139
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	19, 64
CviJI	RGCY	4 cut(s)	9, 36, 248, 276
CviKI_1	RGCY	4 cut(s)	9, 36, 248, 276
CviQI	GTAC	1 cut(s)	157
DrdI	GACNNNNNNGTC	2 cut(s)	113, 211
DseDI	GACNNNNNNGTC	2 cut(s)	113, 211
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	22, 67
FaiI	YATR	2 cut(s)	20, 65
FaqI	GGGAC	2 cut(s)	116, 217
FatI	CATG	2 cut(s)	18, 63
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	90, 195
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	90, 195
GluI	GCNGC	2 cut(s)	90, 195
GsaI	CCCAGC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	22, 67
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	2 cut(s)	109, 253
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	40, 217, 299
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	124, 238
HpyCH4IV	ACGT	2 cut(s)	84, 138
HpyCH4V	TGCA	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	84, 138
Hsp92II	CATG	2 cut(s)	22, 67
KpnI	GGTACC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	33, 41, 142
LpnPI	CCDG	2 cut(s)	234, 266
MaeII	ACGT	2 cut(s)	84, 138
MaeIII	GTNAC	1 cut(s)	80
MbiI	CCGCTC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	49, 93, 103, 127, 201, 226
MspA1I	CMGCKG	1 cut(s)	9
NlaIII	CATG	2 cut(s)	22, 67
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	91, 196
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	158
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	2 cut(s)	90, 195
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	11, 38, 79, 87, 114, 141, 189, 278
SsiI	CCGC	4 cut(s)	68, 89, 145, 194
SstI	GAGCTC	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	2 cut(s)	87, 141
TaqI	TCGA	1 cut(s)	117
TauI	GCSGC	2 cut(s)	92, 197
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.