Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

18774369 .. 18781502

Gene Structure 7134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGATGCTCCCTCTGCTTGTTCGGCTACAATGCATCCCTTATCCTGCCACGTAGCAGTGATCGGTGCTGGTGCCAGCGGCTTGGTGGGGCACGTGAGCTCCGGCGGGAAGGTCACACTGTCGTCTTCTTCGAGCGAGGAGACCAAATCGGTGGCACTTGGGTCTACACTCCAAAAGTGGAGTAGGACCCAGTTGGGATTGACCCGGATAGAACCAGGGTCCACTCGAGCATGTACCAGTCTCTCAGGACCAACCTTCCAAGAGAGATCATGGGGTTCCGGGACTATCCATTTGTGGCCAAGGAAGGAGATGAAGAGAGAGACCCGAGAAGGGTGTATCCTTTTCAAAAGTGCCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCGGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAATATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGATTGTGTCATGGATGCTCTAGCAAAGAAGACTATGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGTATGCTTTGGGTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

279

Amino Acids

30.05

Weight (kDa)

7.55

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	3 cut(s)	81, 108, 643
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	4 cut(s)	541, 720, 791, 813
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	238, 373
AfiI	CCNNNNNNNGG	2 cut(s)	333, 460
AgsI	TTSAA	3 cut(s)	349, 508, 605
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	6 cut(s)	102, 392, 529, 555, 674, 731
AluI	AGCT	6 cut(s)	102, 392, 529, 555, 674, 731
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	4 cut(s)	137, 248, 317, 469
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	1 cut(s)	731
Ama87I	CYCGRG	2 cut(s)	228, 327
AoxI	GGCC	1 cut(s)	299
ApoI	RAATTY	4 cut(s)	541, 720, 791, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AspS9I	GGNCC	4 cut(s)	189, 222, 251, 662
AsuC2I	CCSGG	2 cut(s)	208, 283
AsuHPI	GGTGA	1 cut(s)	528
AvaI	CYCGRG	2 cut(s)	228, 327
AvaII	GGWCC	4 cut(s)	189, 222, 251, 662
BaeGI	GKGCMC	2 cut(s)	96, 358
BalI	TGGCCA	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	120, 767
Bbv12I	GWGCWC	1 cut(s)	104
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	2 cut(s)	350, 597
BcnI	CCSGG	2 cut(s)	208, 283
BcoDI	GTCTC	4 cut(s)	137, 248, 317, 469
BfaI	CTAG	2 cut(s)	626, 752
BfuI	GTATCC	2 cut(s)	350, 597
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	3 cut(s)	208, 219, 283
Bme18I	GGWCC	4 cut(s)	189, 222, 251, 662
BmeT110I	CYCGRG	2 cut(s)	228, 327
BmgT120I	GGNCC	4 cut(s)	189, 222, 251, 662
BmiI	GGNNCC	4 cut(s)	76, 191, 223, 280
BmrFI	CCNGG	3 cut(s)	208, 219, 283
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	3 cut(s)	46, 702, 736
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	2 cut(s)	120, 767
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	208, 283
BsaAI	YACGTR	2 cut(s)	55, 97
BsaI	GGTCTC	3 cut(s)	137, 317, 469
BsaJI	CCNNGG	2 cut(s)	218, 302
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 402, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 460
Bse1I	ACTGG	3 cut(s)	193, 240, 665
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	218, 302
BseGI	GGATG	2 cut(s)	37, 751
BseLI	CCNNNNNNNGG	2 cut(s)	333, 460
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	193, 240, 665
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	2 cut(s)	96, 358
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	228, 327
BsiSI	CCGG	3 cut(s)	105, 208, 282
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	333, 460
BsmAI	GTCTC	4 cut(s)	137, 248, 317, 469
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	301
Bso31I	GGTCTC	3 cut(s)	137, 317, 469
BsoBI	CYCGRG	2 cut(s)	228, 327
Bsp1286I	GDGCHC	3 cut(s)	96, 104, 358
Bsp143I	GATC	4 cut(s)	63, 269, 450, 472
BspACI	CCGC	3 cut(s)	81, 108, 643
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	260
BspLI	GGNNCC	4 cut(s)	76, 191, 223, 280
BspPI	GGATC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	3 cut(s)	137, 317, 469
BsrBI	CCGCTC	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	193, 240, 665
BssECI	CCNNGG	2 cut(s)	218, 302
BssMI	GATC	4 cut(s)	63, 269, 450, 472
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	123, 385
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	2 cut(s)	55, 97
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	247, 398
BstF5I	GGATG	2 cut(s)	37, 751
BstKTI	GATC	4 cut(s)	66, 272, 453, 475
BstMAI	GTCTC	4 cut(s)	137, 248, 317, 469
BstMBI	GATC	4 cut(s)	63, 269, 450, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 26
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	3 cut(s)	206, 217, 281
BstSLI	GKGCMC	2 cut(s)	96, 358
BstV2I	GAAGAC	2 cut(s)	120, 767
BstXI	CCANNNNNNTGG	2 cut(s)	85, 154
BsuI	GTATCC	2 cut(s)	350, 597
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	37, 751
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 119
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	731
Cfr13I	GGNCC	4 cut(s)	189, 222, 251, 662
Csp6I	GTAC	2 cut(s)	237, 372
CviAII	CATG	4 cut(s)	234, 273, 406, 742
CviQI	GTAC	2 cut(s)	237, 372
DdeI	CTNAG	2 cut(s)	247, 398
DpnI	GATC	4 cut(s)	65, 271, 452, 474
DpnII	GATC	4 cut(s)	63, 269, 450, 472
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	3 cut(s)	137, 317, 469
Eco47I	GGWCC	4 cut(s)	189, 222, 251, 662
Eco53kI	GAGCTC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	97
Eco88I	CYCGRG	2 cut(s)	228, 327
EcoICRI	GAGCTC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	237, 276, 409, 745
FaiI	YATR	8 cut(s)	235, 274, 377, 407, 701, 743, 767, 823
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	4 cut(s)	233, 272, 405, 741
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	24, 758
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	2 cut(s)	626, 752
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	3 cut(s)	105, 208, 282
Hin1II	CATG	4 cut(s)	237, 276, 409, 745
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	3 cut(s)	593, 769, 778
HpaII	CCGG	3 cut(s)	105, 208, 282
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	5 cut(s)	168, 225, 622, 662, 808
Hpy188I	TCNGA	4 cut(s)	363, 547, 612, 802
Hpy188III	TCNNGA	3 cut(s)	249, 590, 726
Hpy8I	GTNNAC	5 cut(s)	168, 225, 622, 662, 808
HpyAV	CCTTC	4 cut(s)	106, 268, 301, 326
HpyCH4III	ACNGT	2 cut(s)	123, 385
HpyCH4IV	ACGT	2 cut(s)	54, 96
HpyCH4V	TGCA	3 cut(s)	37, 368, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 26
HpyF3I	CTNAG	2 cut(s)	247, 398
HpySE526I	ACGT	2 cut(s)	54, 96
Hsp92II	CATG	4 cut(s)	237, 276, 409, 745
Kzo9I	GATC	4 cut(s)	63, 269, 450, 472
LmnI	GCTCC	6 cut(s)	16, 107, 402, 534, 671, 728
LweI	GCATC	3 cut(s)	46, 702, 736
MaeI	CTAG	2 cut(s)	626, 752
MaeII	ACGT	2 cut(s)	54, 96
MaeIII	GTNAC	2 cut(s)	115, 775
MalI	GATC	4 cut(s)	65, 271, 452, 474
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	4 cut(s)	63, 269, 450, 472
MboII	GAAGA	4 cut(s)	120, 123, 328, 772
MhlI	GDGCHC	3 cut(s)	96, 104, 358
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	6 cut(s)	541, 600, 648, 720, 791, 813
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	4 cut(s)	25, 133, 369, 427
Mox20I	TGGCCA	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	301
Msp20I	TGGCCA	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	3 cut(s)	105, 208, 282
MspR9I	CCNGG	3 cut(s)	208, 219, 283
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	17, 26
NciI	CCSGG	2 cut(s)	208, 283
NdeII	GATC	4 cut(s)	63, 269, 450, 472
NlaIII	CATG	4 cut(s)	237, 276, 409, 745
NlaIV	GGNNCC	4 cut(s)	76, 191, 223, 280
NmuCI	GTSAC	2 cut(s)	115, 775
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	593, 769
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	772
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	772
Ppu21I	YACGTR	2 cut(s)	55, 97
PpuMI	RGGWCCY	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	76, 191, 223, 280
PspPI	GGNCC	4 cut(s)	189, 222, 251, 662
PspPPI	RGGWCCY	1 cut(s)	189
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	238, 373
RsaNI	GTAC	2 cut(s)	237, 372
SacI	GAGCTC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	4 cut(s)	63, 269, 450, 472
Sau96I	GGNCC	4 cut(s)	189, 222, 251, 662
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	208, 219, 283
SduI	GDGCHC	3 cut(s)	96, 104, 358
SfaNI	GCATC	3 cut(s)	46, 702, 736
Sfr274I	CTCGAG	1 cut(s)	228
SinI	GGWCC	4 cut(s)	189, 222, 251, 662
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	228, 556
SmoI	CTYRAG	2 cut(s)	228, 556
Sse9I	AATT	6 cut(s)	541, 600, 648, 720, 791, 813
SsiI	CCGC	3 cut(s)	81, 108, 643
SspMI	CTAG	2 cut(s)	626, 752
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	206, 217, 281
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	123, 385
TaiI	ACGT	2 cut(s)	57, 99
TaqI	TCGA	2 cut(s)	134, 229
TasI	AATT	6 cut(s)	541, 600, 648, 720, 791, 813
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	593, 769
TscAI	CASTG	2 cut(s)	66, 126
TseFI	GTSAC	2 cut(s)	115, 775
Tsp45I	GTSAC	2 cut(s)	115, 775
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	66, 126
VpaK11BI	GGWCC	4 cut(s)	189, 222, 251, 662
XapI	RAATTY	4 cut(s)	541, 720, 791, 813
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	2 cut(s)	626, 752
ZrmI	AGTACT	1 cut(s)	373
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.