Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Forward (+)

30426222 .. 30428445

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0304300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTTGAGAGGGATGAAAAGGTCATTGGAAGGAAGGATGATGTGTTAAAAATTGTTGAGAGCTTGACCAACTCCAACAATCAGCAGATCAATCTTTCAGTTATTGCCATATGGGGAATGGCCGGATTGGGAAAGACGACTTTGGCTAAATCAGTGTACAATGAATCTGCCATAGATTCACACTTCCATAAAAAAATATGGGTGTGTGTATCTAACACTTTTCAAGTGGAGACGATTTTAAGTCAGATGGTAGACTCTGTAATACCAGAAAAGGCTGGAATGAAAAGCCAAGATGCATTGCTTAAAGTTCTGAAAGACGAGCTGAAAGAGAAGAGATATGTTCTGGTGCTCGATGATGTTTGGAATGAGGATAGTAAAAAGTGGGAAAGCTTGATGAGTTGTTTGTCAAAGGTGAATTCTAATCCGGGAAGCAGCATTATCGTCACCACACGTAATGCCAATGTGGCATCTATTCCTGAAAAACTTCCCGGACTTGCTAAAACACTTCTCAGACTTGAACTGACAAATTTATCAACGGAGGAATGTTGGTTCATTTTGAAGCAAAGAGCATTGATAGATGATAATGATTTCATCGACGCAGATCGAGAAAAAATTGGGAAGGCAATTGCTGCAAAGTGTGGAGGCGTACCCTTAGCTGCAAAGGTTTTGGGAAGCATAATGCGCTCTAAAACTAGTAGAGATGAATGGTTGGCAATTCAAGAAAGCGAAATATGGCACTTAACCAGAGAAGAGGATAGAATCATGTCGGTATTGAAGTTGAGTTTTATTAACTTGAAGTCACCGCCTTTGAAGCAATATTGCTTTGCATATTGCTCAATGTTGAAGAAAGATTTCGAAATTGAAAGAGATAATTTGATCCAACTTTGGATGGCTCAGGGATTGCTTCAGCTTTCAACTGACAATCATGATGAAATGGAGGATACAGGCAAAAACTATTTTGATACTCTATTGAAAAACTCCTTATTTCAAGAGGTAACTGATGGTGGCACTATTACCAAGTACACAATGCACGATCTTGTGCATGATCTTGCAGAAGAAGTATCCAAAAGTGAGAGCTTGACGCAAGATTTGAATGATACATGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

369

Amino Acids

41.81

Weight (kDa)

5.22

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	12 - 190	1.5e-34	NB-ARC domain
NACHT	PF05729	34 - 179	1.5e-07	NACHT domain
WHD_DRP	PF23559	282 - 351	5e-24	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	415, 526
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	3 cut(s)	158, 648, 1022
AflIII	ACRYGT	1 cut(s)	449
AhlI	ACTAGT	1 cut(s)	692
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	6 cut(s)	63, 322, 390, 656, 910, 1077
AluI	AGCT	6 cut(s)	63, 322, 390, 656, 910, 1077
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	871
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	432, 629, 656
ApoI	RAATTY	2 cut(s)	415, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	1072, 1104
Asp700I	GAANNNNTTC	2 cut(s)	483, 851
AspLEI	GCGC	1 cut(s)	684
AsuC2I	CCSGG	2 cut(s)	426, 489
AsuHPI	GGTGA	3 cut(s)	424, 436, 792
AsuII	TTCGAA	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	444, 616, 643
BccI	CCATC	3 cut(s)	241, 883, 995
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciVI	GTATCC	2 cut(s)	934, 1072
BcnI	CCSGG	2 cut(s)	426, 489
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	1 cut(s)	693
BfuI	GTATCC	2 cut(s)	934, 1072
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	3 cut(s)	433, 630, 657
BlsI	GCNGC	3 cut(s)	434, 631, 658
Bme1390I	CCNGG	2 cut(s)	426, 489
BmrFI	CCNGG	2 cut(s)	426, 489
BmsI	GCATC	2 cut(s)	283, 476
Bpu10I	CCTNAGC	2 cut(s)	652, 894
Bpu14I	TTCGAA	1 cut(s)	855
BpuMI	CCSGG	2 cut(s)	426, 489
BsaAI	YACGTR	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	296
BseGI	GGATG	3 cut(s)	19, 43, 894
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	523, 908
BseXI	GCAGC	3 cut(s)	444, 616, 643
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	3 cut(s)	123, 425, 489
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	855
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	87, 601, 876, 1033, 1045
BspACI	CCGC	1 cut(s)	803
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	522, 907
BspHI	TCATGA	1 cut(s)	925
BspPI	GGATC	1 cut(s)	871
BspT104I	TTCGAA	1 cut(s)	855
BsrDI	GCAATG	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	156
BssMI	GATC	5 cut(s)	87, 601, 876, 1033, 1045
Bst6I	CTCTTC	2 cut(s)	326, 744
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	855
BstDEI	CTNAG	3 cut(s)	509, 652, 894
BstF5I	GGATG	3 cut(s)	19, 43, 894
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	5 cut(s)	90, 604, 879, 1036, 1048
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	5 cut(s)	87, 601, 876, 1033, 1045
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 629, 681, 811
BstNSI	RCATGY	2 cut(s)	1104, 1108
BstSCI	CCNGG	2 cut(s)	424, 487
BstV1I	GCAGC	3 cut(s)	444, 616, 643
BsuI	GTATCC	2 cut(s)	934, 1072
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	19, 43, 894
BtsIMutI	CAGTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	925
CfoI	GCGC	1 cut(s)	684
CseI	GACGC	2 cut(s)	605, 1090
Csp6I	GTAC	3 cut(s)	157, 647, 1021
CviAII	CATG	5 cut(s)	763, 926, 1043, 1101, 1105
CviQI	GTAC	3 cut(s)	157, 647, 1021
DdeI	CTNAG	3 cut(s)	509, 652, 894
DpnI	GATC	5 cut(s)	89, 603, 878, 1035, 1047
DpnII	GATC	5 cut(s)	87, 601, 876, 1033, 1045
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	326, 744
EarI	CTCTTC	2 cut(s)	326, 744
Eco57I	CTGAAG	1 cut(s)	890
EcoRI	GAATTC	1 cut(s)	415
EcoT22I	ATGCAT	2 cut(s)	298, 1106
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	5 cut(s)	766, 929, 1046, 1104, 1108
FatI	CATG	5 cut(s)	762, 925, 1042, 1100, 1104
FauNDI	CATATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	433, 630, 657
FokI	GGATG	3 cut(s)	26, 50, 901
Fsp4HI	GCNGC	3 cut(s)	433, 630, 657
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	3 cut(s)	433, 630, 657
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	3 cut(s)	123, 425, 489
HgaI	GACGC	2 cut(s)	605, 1090
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	5 cut(s)	766, 929, 1046, 1104, 1108
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	4 cut(s)	164, 176, 254, 759
HpaII	CCGG	3 cut(s)	123, 425, 489
HphI	GGTGA	3 cut(s)	424, 436, 792
Hpy166II	GTNNAC	3 cut(s)	157, 253, 1023
Hpy188I	TCNGA	3 cut(s)	246, 312, 512
Hpy188III	TCNNGA	5 cut(s)	476, 605, 719, 926, 989
Hpy8I	GTNNAC	3 cut(s)	157, 253, 1023
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	3 cut(s)	24, 28, 613
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	8 cut(s)	296, 632, 659, 827, 1030, 1042, 1052, 1104
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 629, 681, 811
HpyF3I	CTNAG	3 cut(s)	509, 652, 894
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	766, 929, 1046, 1104, 1108
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	87, 601, 876, 1033, 1045
Lsp1109I	GCAGC	3 cut(s)	444, 616, 643
LweI	GCATC	2 cut(s)	283, 476
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	442, 798, 994
MalI	GATC	5 cut(s)	89, 603, 878, 1035, 1047
MboI	GATC	5 cut(s)	87, 601, 876, 1033, 1045
MboII	GAAGA	4 cut(s)	343, 761, 856, 1067
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	8 cut(s)	51, 415, 526, 612, 624, 714, 858, 871
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	99, 904
MnlI	CCTC	7 cut(s)	3, 361, 532, 635, 745, 931, 985
Mph1103I	ATGCAT	2 cut(s)	298, 1106
MroXI	GAANNNNTTC	2 cut(s)	483, 851
MseI	TTAA	5 cut(s)	47, 239, 303, 740, 789
MslI	CAYNNNNRTG	1 cut(s)	1105
MspI	CCGG	3 cut(s)	123, 425, 489
MspR9I	CCNGG	2 cut(s)	426, 489
MunI	CAATTG	1 cut(s)	624
MwoI	GCNNNNNNNGC	4 cut(s)	464, 629, 681, 811
NciI	CCSGG	2 cut(s)	426, 489
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	5 cut(s)	87, 601, 876, 1033, 1045
NlaIII	CATG	5 cut(s)	766, 929, 1046, 1104, 1108
NmuCI	GTSAC	2 cut(s)	442, 798
NsiI	ATGCAT	2 cut(s)	298, 1106
NspI	RCATGY	2 cut(s)	1104, 1108
NspV	TTCGAA	1 cut(s)	855
PagI	TCATGA	1 cut(s)	925
PdmI	GAANNNNTTC	2 cut(s)	483, 851
PfeI	GAWTC	3 cut(s)	164, 176, 759
PfoI	TCCNGGA	2 cut(s)	424, 487
PkrI	GCNGC	3 cut(s)	434, 631, 658
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	452
RsaI	GTAC	3 cut(s)	158, 648, 1022
RsaNI	GTAC	3 cut(s)	157, 647, 1021
RseI	CAYNNNNRTG	1 cut(s)	1105
SaqAI	TTAA	5 cut(s)	47, 239, 303, 740, 789
SatI	GCNGC	3 cut(s)	433, 630, 657
Sau3AI	GATC	5 cut(s)	87, 601, 876, 1033, 1045
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	426, 489
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	283, 476
SfuI	TTCGAA	1 cut(s)	855
SmiMI	CAYNNNNRTG	1 cut(s)	1105
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	8 cut(s)	51, 415, 526, 612, 624, 714, 858, 871
SsiI	CCGC	1 cut(s)	803
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	424, 487
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	351, 594, 604, 855
TasI	AATT	8 cut(s)	51, 415, 526, 612, 624, 714, 858, 871
TatI	WGTACW	2 cut(s)	156, 1020
TfiI	GAWTC	3 cut(s)	164, 176, 759
Tru1I	TTAA	5 cut(s)	47, 239, 303, 740, 789
Tru9I	TTAA	5 cut(s)	47, 239, 303, 740, 789
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	442, 798
TseI	GCWGC	3 cut(s)	432, 629, 656
Tsp45I	GTSAC	2 cut(s)	442, 798
TspDTI	ATGAA	7 cut(s)	30, 177, 296, 541, 580, 717, 945
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	2 cut(s)	415, 526
XceI	RCATGY	2 cut(s)	1104, 1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	2 cut(s)	483, 851
XspI	CTAG	1 cut(s)	693
Zsp2I	ATGCAT	2 cut(s)	298, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.