Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Forward (+)

30355125 .. 30386595

Gene Structure 31471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCTCTGTAAGTGTGGCTCCTTTATCTGGATTAAGATACCACAGTGGAATTGCAGTTGCTATCAATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGTATGACAAGGAAATGGAAGCAACTGTCGTAGATGGTAAAGGAACAGAAACAGTAATGCTCAGGAGGTTTCTTCCACAACAAACTAACAGAAGTTTTACTGGACTGTTGAGGCTTGAAATCTTAGTAGATTTCCATTCCCTGGCAGAATCAATAACAACTATTGGTGGAAACAGGTCATATAATTGTCAGGACTATTGGTGGAAGAAATGGCCGGCCAAAGCAGGTTTCCTTGATTTTGGAGTTCAAAAGATACAGAAATCAATTGCAAAGGGAATCCATAGTGTTCTTCTCTGTGTTCAAGTTTACTTTTGCTCACGGAAATCGTATCGGTTGGGGTGTATCCTTTTCAAAAGTGCCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAAAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAACAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGCGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAATATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGATTGTGTCATGGATGCTCTAGCAAAGAAGACTATGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

311

Amino Acids

34.65

Weight (kDa)

8.73

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	244
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	2 cut(s)	314, 318
AcsI	RAATTY	4 cut(s)	646, 825, 896, 918
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	29, 244, 565
AgsI	TTSAA	6 cut(s)	221, 350, 404, 454, 613, 710
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	5 cut(s)	497, 634, 660, 779, 836
AluI	AGCT	5 cut(s)	497, 634, 660, 779, 836
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	550
AlwNI	CAGNNNCTG	1 cut(s)	836
AoxI	GGCC	3 cut(s)	3, 314, 318
ApoI	RAATTY	4 cut(s)	646, 825, 896, 918
AspS9I	GGNCC	1 cut(s)	767
AsuHPI	GGTGA	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbsI	GAAGAC	1 cut(s)	872
BccI	CCATC	2 cut(s)	131, 646
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	2 cut(s)	455, 702
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	2 cut(s)	731, 857
BfuAI	ACCTGC	1 cut(s)	317
BfuI	GTATCC	2 cut(s)	455, 702
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	767
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	807, 841
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	872
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 244, 565
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	3 cut(s)	78, 208, 770
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	3 cut(s)	29, 244, 565
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	3 cut(s)	78, 208, 770
BseSI	GKGCMC	1 cut(s)	463
BshFI	GGCC	3 cut(s)	5, 316, 320
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	29, 244, 565
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	5, 316, 320
Bso31I	GGTCTC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	555, 577
BspANI	GGCC	3 cut(s)	5, 316, 320
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	78, 208, 770
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	555, 577
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	5 cut(s)	47, 130, 157, 210, 490
BstC8I	GCNNGC	2 cut(s)	318, 746
BstDEI	CTNAG	3 cut(s)	164, 226, 503
BstF5I	GGATG	1 cut(s)	856
BstKTI	GATC	2 cut(s)	558, 580
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	2 cut(s)	555, 577
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	872
BsuI	GTATCC	2 cut(s)	455, 702
BsuRI	GGCC	3 cut(s)	5, 316, 320
BtsCI	GGATG	1 cut(s)	856
BtsIMutI	CAGTG	2 cut(s)	52, 85
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	318, 746
CaiI	CAGNNNCTG	1 cut(s)	836
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	767
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	3 cut(s)	94, 511, 847
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	3 cut(s)	164, 226, 503
DpnI	GATC	2 cut(s)	557, 579
DpnII	GATC	2 cut(s)	555, 577
EaeI	YGGCCR	2 cut(s)	314, 318
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	97, 514, 850
FatI	CATG	3 cut(s)	93, 510, 846
FokI	GGATG	1 cut(s)	863
FseI	GGCCGGCC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	731, 857
HaeIII	GGCC	3 cut(s)	5, 316, 320
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	3 cut(s)	97, 514, 850
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	5 cut(s)	251, 378, 698, 874, 883
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	633
Hpy166II	GTNNAC	4 cut(s)	409, 727, 767, 913
Hpy188I	TCNGA	4 cut(s)	468, 652, 717, 907
Hpy188III	TCNNGA	5 cut(s)	30, 166, 293, 695, 831
Hpy8I	GTNNAC	4 cut(s)	409, 727, 767, 913
HpyCH4III	ACNGT	5 cut(s)	47, 130, 157, 210, 490
HpyCH4V	TGCA	4 cut(s)	56, 371, 473, 758
HpyF3I	CTNAG	3 cut(s)	164, 226, 503
Hsp92II	CATG	3 cut(s)	97, 514, 850
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	555, 577
LmnI	GCTCC	5 cut(s)	25, 507, 639, 776, 833
LweI	GCATC	2 cut(s)	807, 841
MaeI	CTAG	2 cut(s)	731, 857
MaeIII	GTNAC	1 cut(s)	880
MalI	GATC	2 cut(s)	557, 579
MboI	GATC	2 cut(s)	555, 577
MboII	GAAGA	4 cut(s)	167, 319, 383, 877
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	877
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	5 cut(s)	16, 162, 207, 474, 532
MroNI	GCCGGC	1 cut(s)	316
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	245
NaeI	GCCGGC	1 cut(s)	318
NdeII	GATC	2 cut(s)	555, 577
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	97, 514, 850
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	880
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	251, 378, 698, 874
PflMI	CCANNNNNTGG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	767
PstNI	CAGNNNCTG	1 cut(s)	836
RigI	GGCCGGCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	555, 577
Sau96I	GGNCC	1 cut(s)	767
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	1 cut(s)	877
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	807, 841
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SspMI	CTAG	2 cut(s)	731, 857
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	5 cut(s)	47, 130, 157, 210, 490
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	4 cut(s)	251, 378, 698, 874
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	52, 85
TseFI	GTSAC	1 cut(s)	880
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	2 cut(s)	101, 110
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	52, 85
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	4 cut(s)	646, 825, 896, 918
XspI	CTAG	2 cut(s)	731, 857
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.