Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Forward (+)

58953710 .. 58957698

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATCTAGGAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGTCGATGTATTTGGATCCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGATAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGATCATAAAAGCTTGTGCTTTGGTAAGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

252

Amino Acids

28.3

Weight (kDa)

8.94

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	164 - 245	3e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	31, 325, 621, 634
AcsI	RAATTY	4 cut(s)	83, 119, 421, 600
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	88, 124, 229, 388, 485
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	6 cut(s)	272, 409, 435, 554, 611, 737
AluI	AGCT	6 cut(s)	272, 409, 435, 554, 611, 737
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	4 cut(s)	31, 325, 621, 634
AlwNI	CAGNNNCTG	1 cut(s)	611
ApoI	RAATTY	4 cut(s)	83, 119, 421, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	174, 408
AvaII	GGWCC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	626
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	3 cut(s)	230, 477, 651
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	3 cut(s)	147, 212, 506
BfuI	GTATCC	3 cut(s)	230, 477, 651
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	179, 545
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	24, 126
BseNI	ACTGG	2 cut(s)	179, 545
BslFI	GGGAC	2 cut(s)	153, 221
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	2 cut(s)	153, 221
BsmI	GAATGC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	349
Bsp143I	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
BspCNI	CTCAG	2 cut(s)	25, 127
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	4 cut(s)	31, 325, 621, 634
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	179, 545
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	47, 265
Bst6I	CTCTTC	2 cut(s)	72, 202
BstDEI	CTNAG	4 cut(s)	20, 33, 135, 278
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	6 cut(s)	39, 57, 333, 355, 629, 729
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	36, 626
BstYI	RGATCY	2 cut(s)	36, 626
BsuI	GTATCC	3 cut(s)	230, 477, 651
BtsCI	GGATG	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	286
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	4 cut(s)	20, 33, 135, 278
DpnI	GATC	6 cut(s)	38, 56, 332, 354, 628, 728
DpnII	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
Eam1104I	CTCTTC	2 cut(s)	72, 202
EarI	CTCTTC	2 cut(s)	72, 202
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	289
FaqI	GGGAC	2 cut(s)	153, 221
FatI	CATG	1 cut(s)	285
FokI	GGATG	1 cut(s)	190
FspBI	CTAG	3 cut(s)	147, 212, 506
Hin1II	CATG	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	2 cut(s)	174, 408
Hpy166II	GTNNAC	2 cut(s)	502, 542
Hpy188I	TCNGA	5 cut(s)	34, 136, 243, 427, 492
Hpy188III	TCNNGA	4 cut(s)	110, 470, 606, 677
Hpy8I	GTNNAC	2 cut(s)	502, 542
HpyAV	CCTTC	2 cut(s)	116, 145
HpyCH4III	ACNGT	2 cut(s)	47, 265
HpyCH4V	TGCA	2 cut(s)	248, 533
HpyF3I	CTNAG	4 cut(s)	20, 33, 135, 278
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
LmnI	GCTCC	4 cut(s)	282, 414, 551, 608
LpnPI	CCDG	9 cut(s)	58, 85, 160, 309, 324, 483, 540, 558, 591
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	3 cut(s)	147, 212, 506
MaeIII	GTNAC	2 cut(s)	63, 180
MalI	GATC	6 cut(s)	38, 56, 332, 354, 628, 728
MboI	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
MboII	GAAGA	4 cut(s)	64, 89, 189, 736
MflI	RGATCY	2 cut(s)	36, 626
MluCI	AATT	7 cut(s)	83, 100, 119, 421, 480, 528, 600
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	4 cut(s)	9, 130, 249, 307
MseI	TTAA	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	36, 626
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	6 cut(s)	36, 54, 330, 352, 626, 726
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	9 cut(s)	274, 298, 345, 411, 437, 507, 556, 613, 739
SfaNI	GCATC	1 cut(s)	582
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	7 cut(s)	83, 100, 119, 421, 480, 528, 600
SspMI	CTAG	3 cut(s)	147, 212, 506
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	47, 265
TaqI	TCGA	2 cut(s)	109, 615
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	7 cut(s)	83, 100, 119, 421, 480, 528, 600
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	4 cut(s)	83, 119, 421, 600
XspI	CTAG	3 cut(s)	147, 212, 506
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.