Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Forward (+)

49164770 .. 49166350

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0378200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTTTCACTTCCATCCTTCGCAGATCGGCCTCATCTCTCGCCCCACTAGCCACCCGGCTCGTCCGCGGCCAACGGAACTACCACGCCGCCGTCATCACCGCCATAAACCACTCCAGCTTCGCCGGCCGGAAGCCCTCCTCTCTGAGCCCTCTGGTCCCAAGCCCTCGCTACTATTCCAAGGCCGACGACAGCCTTCTCCGAGTCATCGACGCCGAGATTCAGTGCGCCGAGGAGACCGATGATCAGGAGATTGAAGAGGTTCCGAGTGGTTTCTCTTTTAAGATAGAAGATGAGCCTGGATTCCAGACTGTGAAACTGAGGAGAACTTATCAAGATGAAGAGATTGAAGTGGAAGTTCACATGCCTGATCTAGTTACTGGCGAAGGTGAGGATGATGATGTGGATGATGATGGTAACGAACACGCCAATCAATCGAGCATCCCATTGGTCGTGAGCGTCTCCAAGGGTAGTGGCGCGCCTATTCTAGAGTTTAGCTGCAATGCTTTCCCTGATGAGATTGCAATTGAGAGCTTGGTTGTTAAGAATCCCAATACTTCTGAGGATCAAATCCCCTACGAGGGGCCTGACTTCCATGATTTGGATGAGAATCTCCAGAAGTCCTTCCACAAGTACTTGGAGATTAGGGGAATCAAGCCCAGCACAACCAATTTCTTGCATGAGTACATGATCAATAAAGACAGCAGGGAATATAAGAACTGGTTGAAGAAACTTAAGCAGTTCGTTCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

251

Amino Acids

28.29

Weight (kDa)

4.73

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	71 - 249	8.9e-49	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccII	CGCG	2 cut(s)	69, 479
AciI	CCGC	4 cut(s)	67, 69, 90, 102
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	2 cut(s)	70, 127
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	635, 686
AfiI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	257, 350, 727, 749
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	120, 498, 534
AluI	AGCT	3 cut(s)	120, 498, 534
Alw26I	GTCTC	2 cut(s)	230, 466
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	5 cut(s)	30, 70, 127, 183, 584
ApeKI	GCWGC	1 cut(s)	498
AscI	GGCGCGCC	1 cut(s)	477
Asp700I	GAANNNNTTC	2 cut(s)	261, 623
AspLEI	GCGC	3 cut(s)	230, 479, 481
AspS9I	GGNCC	2 cut(s)	157, 584
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	91, 401
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	2 cut(s)	23, 407
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	2 cut(s)	244, 690
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	230, 466
BfaI	CTAG	3 cut(s)	50, 374, 488
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	3 cut(s)	70, 90, 499
BlsI	GCNGC	3 cut(s)	71, 91, 500
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	58, 300
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	157, 584
BmiI	GGNNCC	3 cut(s)	159, 264, 585
BmrFI	CCNGG	2 cut(s)	58, 300
BmsI	GCATC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	100, 599
BpuMI	CCSGG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	67, 180, 231, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	385, 725
Bse3DI	GCAATG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	67, 180, 231, 465
BseGI	GGATG	5 cut(s)	15, 400, 412, 441, 610
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	137, 311, 552
BseNI	ACTGG	2 cut(s)	385, 725
BsePI	GCGCGC	1 cut(s)	477
BseRI	GAGGAG	3 cut(s)	130, 248, 337
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	485
BseYI	CCCAGC	1 cut(s)	659
Bsh1236I	CGCG	2 cut(s)	69, 479
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	5 cut(s)	32, 72, 129, 185, 586
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	58, 126, 130
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	4 cut(s)	580, 581, 582, 601
BsmAI	GTCTC	2 cut(s)	230, 466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	32, 72, 129, 185, 586
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	26, 244, 370, 565, 690
BspACI	CCGC	4 cut(s)	67, 69, 90, 102
BspANI	GGCC	5 cut(s)	32, 72, 129, 185, 586
BspCNI	CTCAG	3 cut(s)	138, 312, 553
BspFNI	CGCG	2 cut(s)	69, 479
BspLI	GGNNCC	3 cut(s)	159, 264, 585
BspPI	GGATC	1 cut(s)	573
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	385, 725
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	67, 180, 231, 465
BssHII	GCGCGC	1 cut(s)	477
BssMI	GATC	5 cut(s)	26, 244, 370, 565, 690
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	180, 465
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	252, 336
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	127, 479
BstDEI	CTNAG	3 cut(s)	146, 320, 561
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	5 cut(s)	15, 400, 412, 441, 610
BstFNI	CGCG	2 cut(s)	69, 479
BstHHI	GCGC	3 cut(s)	230, 479, 481
BstKTI	GATC	5 cut(s)	29, 247, 373, 568, 693
BstMAI	GTCTC	2 cut(s)	230, 466
BstMBI	GATC	5 cut(s)	26, 244, 370, 565, 690
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 126
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	56, 298
BstUI	CGCG	2 cut(s)	69, 479
BstV1I	GCAGC	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	5 cut(s)	32, 72, 129, 185, 586
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	5 cut(s)	15, 400, 412, 441, 610
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	127, 479
CfoI	GCGC	3 cut(s)	230, 479, 481
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	157, 584
Cfr42I	CCGCGG	1 cut(s)	70
CseI	GACGC	2 cut(s)	221, 448
Csp6I	GTAC	2 cut(s)	634, 685
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	364, 596, 680, 688
CviQI	GTAC	2 cut(s)	634, 685
DdeI	CTNAG	3 cut(s)	146, 320, 561
DpnI	GATC	5 cut(s)	28, 246, 372, 567, 692
DpnII	GATC	5 cut(s)	26, 244, 370, 565, 690
EaeI	YGGCCR	2 cut(s)	70, 127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	252, 336
EarI	CTCTTC	2 cut(s)	252, 336
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	180, 465
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	180, 465
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	2 cut(s)	180, 465
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	367, 599, 683, 691
FaiI	YATR	6 cut(s)	107, 365, 597, 681, 689, 714
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	363, 595, 679, 687
FbaI	TGATCA	2 cut(s)	244, 690
Fnu4HI	GCNGC	3 cut(s)	70, 90, 499
FokI	GGATG	5 cut(s)	2, 407, 419, 428, 617
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	70, 90, 499
FspBI	CTAG	3 cut(s)	50, 374, 488
GlaI	GCGC	3 cut(s)	229, 478, 480
GluI	GCNGC	3 cut(s)	70, 90, 499
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	100, 599
HaeIII	GGCC	5 cut(s)	32, 72, 129, 185, 586
HapII	CCGG	3 cut(s)	58, 126, 130
HgaI	GACGC	2 cut(s)	221, 448
HhaI	GCGC	3 cut(s)	230, 479, 481
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	367, 599, 683, 691
Hin6I	GCGC	3 cut(s)	228, 477, 479
HinP1I	GCGC	3 cut(s)	228, 477, 479
HinfI	GANTC	6 cut(s)	204, 220, 303, 547, 610, 651
HpaII	CCGG	3 cut(s)	58, 126, 130
HphI	GGTGA	2 cut(s)	91, 401
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	147, 203, 267, 562
Hpy188III	TCNNGA	7 cut(s)	248, 307, 335, 454, 488, 616, 749
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	2 cut(s)	191, 215
HpyAV	CCTTC	4 cut(s)	29, 206, 380, 634
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	501, 524, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 126
HpyF3I	CTNAG	3 cut(s)	146, 320, 561
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	367, 599, 683, 691
HspAI	GCGC	3 cut(s)	228, 477, 479
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	244, 690
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	26, 244, 370, 565, 690
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	3 cut(s)	50, 374, 488
MaeIII	GTNAC	2 cut(s)	376, 416
MalI	GATC	5 cut(s)	28, 246, 372, 567, 692
MboI	GATC	5 cut(s)	26, 244, 370, 565, 690
MboII	GAAGA	4 cut(s)	269, 302, 353, 739
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	525, 670
MlyI	GAGTC	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	261, 623
MseI	TTAA	4 cut(s)	282, 543, 735, 754
MspA1I	CMGCKG	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	3 cut(s)	58, 126, 130
MspR9I	CCNGG	2 cut(s)	58, 300
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	69, 479
MwoI	GCNNNNNNNGC	2 cut(s)	50, 126
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	5 cut(s)	26, 244, 370, 565, 690
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	4 cut(s)	367, 599, 683, 691
NlaIV	GGNNCC	3 cut(s)	159, 264, 585
NmeAIII	GCCGAG	2 cut(s)	241, 256
NspI	RCATGY	1 cut(s)	367
PalAI	GGCGCGCC	1 cut(s)	477
PauI	GCGCGC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	261, 623
PfeI	GAWTC	5 cut(s)	220, 303, 547, 610, 651
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	71, 91, 500
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	159, 264, 585
PspPI	GGNCC	2 cut(s)	157, 584
PteI	GCGCGC	1 cut(s)	477
RsaI	GTAC	2 cut(s)	635, 686
RsaNI	GTAC	2 cut(s)	634, 685
SacII	CCGCGG	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	282, 543, 735, 754
SatI	GCNGC	3 cut(s)	70, 90, 499
Sau3AI	GATC	5 cut(s)	26, 244, 370, 565, 690
Sau96I	GGNCC	2 cut(s)	157, 584
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	58, 300
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	5 cut(s)	122, 264, 391, 500, 536
SfaNI	GCATC	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	70
SgsI	GGCGCGCC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	2 cut(s)	525, 670
SsiI	CCGC	4 cut(s)	67, 69, 90, 102
SspMI	CTAG	3 cut(s)	50, 374, 488
StyD4I	CCNGG	2 cut(s)	56, 298
StyI	CCWWGG	2 cut(s)	180, 465
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	210, 437
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	525, 670
TatI	WGTACW	2 cut(s)	633, 684
TauI	GCSGC	2 cut(s)	72, 92
TfiI	GAWTC	5 cut(s)	220, 303, 547, 610, 651
Tru1I	TTAA	4 cut(s)	282, 543, 735, 754
Tru9I	TTAA	4 cut(s)	282, 543, 735, 754
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	601
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	367
XmnI	GAANNNNTTC	2 cut(s)	261, 623
XspI	CTAG	3 cut(s)	50, 374, 488
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.