Rorug07G0304400

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005551
Physical Location & Seq
Reverse (-)
30431673 .. 30432637
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0304400.1

Sequence Viewer

Length: 678 bp
ATGAGTTTGATGCGTTGGTTTGTAGCAGTGGAAGACCCTGGTACTTATACAGAAGAAGATGGAAGACTTTTCCCAGATCCAGATTATTCGTCACACATTGACTACCGATGGGGTTGTGAAGGATTAAAGAAAACCATTTGGAAGCTCTTAAATGGCCCTGATGGTGAACGGAATTCCACATCTTCGAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATTTCATACTTGATCAAGGATCCTAGTAAGGCAAAGAAAGTTGATGATTTAAGACAGAAACTCAGGATGCGGGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACGCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGTTACCTTTTTGTACGCTGGAGATTGAATGTTGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACAGCGATTATGAAGAAATCATAGCAGGGACTCACAAGACCATAATCATGAAAGGGATGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTACCTGAGAGACGACAATGTCCCTCCTCAGAGCCCACTGGTCGCCATTGTAAATGGGCAAGCTCCAACAGCTGATGAGATTGCCACTGCTCTGAAGCAAGTCACCAAATCTGCTGCTGGAATGTGA

Protein Analysis

225

Amino Acids

25.18

Weight (kDa)

7.67

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 14 - 179 9.7e-12 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
AccII CGCG 1 cut(s) 340
AciI CCGC 1 cut(s) 298
AclWI GGATC 3 cut(s) 71, 242, 255
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 546, 665
AfaI GTAC 3 cut(s) 43, 323, 399
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 2 cut(s) 197, 412
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 6 cut(s) 145, 333, 532, 552, 614, 623
AluI AGCT 6 cut(s) 145, 333, 532, 552, 614, 623
Alw21I GWGCWC 2 cut(s) 335, 376
Alw26I GTCTC 2 cut(s) 444, 555
AlwI GGATC 3 cut(s) 71, 242, 255
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 309, 532, 665
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 176, 646
AvaI CYCGRG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 2 cut(s) 335, 587
BbsI GAAGAC 2 cut(s) 39, 70
Bbv12I GWGCWC 2 cut(s) 335, 376
BbvI GCAGC 3 cut(s) 296, 519, 652
BccI CCATC 5 cut(s) 53, 102, 155, 321, 502
BciT130I CCWGG 1 cut(s) 39
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 444, 555
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 325
BisI GCNGC 3 cut(s) 310, 533, 666
BlsI GCNGC 3 cut(s) 311, 534, 667
Bme1390I CCNGG 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 2 cut(s) 39, 70
BpmI CTGGAG 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 37, 436
Bse1I ACTGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 37, 436
BseGI GGATG 3 cut(s) 300, 313, 513
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 4 cut(s) 304, 397, 548, 593
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 567
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 296, 519, 652
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 335, 376
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 3 cut(s) 315, 493, 557
BsmAI GTCTC 2 cut(s) 444, 555
BsmBI CGTCTC 1 cut(s) 555
BsmFI GGGAC 3 cut(s) 315, 493, 557
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 4 cut(s) 223, 335, 376, 587
Bsp143I GATC 3 cut(s) 76, 240, 247
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 4 cut(s) 303, 396, 549, 592
BspFNI CGCG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 329
BspPI GGATC 3 cut(s) 71, 242, 255
BspQI GCTCTTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 37, 436
BssMI GATC 3 cut(s) 76, 240, 247
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 5 cut(s) 290, 383, 536, 557, 579
BstF5I GGATG 3 cut(s) 300, 313, 513
BstFNI CGCG 1 cut(s) 340
BstKTI GATC 3 cut(s) 79, 243, 250
BstMAI GTCTC 2 cut(s) 444, 555
BstMBI GATC 3 cut(s) 76, 240, 247
BstMWI GCNNNNNNNGC 2 cut(s) 371, 620
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 296, 519, 652
BstV2I GAAGAC 2 cut(s) 39, 70
BstX2I RGATCY 2 cut(s) 76, 247
BstYI RGATCY 2 cut(s) 76, 247
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 3 cut(s) 300, 313, 513
BtsI GCAGTG 3 cut(s) 33, 223, 636
BtsIMutI CAGTG 4 cut(s) 33, 223, 587, 636
Cac8I GCNNGC 1 cut(s) 612
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 3 cut(s) 42, 322, 398
CviAII CATG 2 cut(s) 424, 499
CviQI GTAC 3 cut(s) 42, 322, 398
DdeI CTNAG 5 cut(s) 290, 383, 536, 557, 579
DpnI GATC 3 cut(s) 78, 242, 249
DpnII GATC 3 cut(s) 76, 240, 247
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Ecl136II GAGCTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 335, 587
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 546, 665
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 2 cut(s) 335, 587
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 2 cut(s) 427, 502
FaiI YATR 9 cut(s) 48, 206, 235, 425, 429, 462, 473, 494, 500
FaqI GGGAC 3 cut(s) 315, 493, 557
FatI CATG 2 cut(s) 423, 498
FauI CCCGC 1 cut(s) 291
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 310, 533, 666
FokI GGATG 3 cut(s) 300, 307, 520
FriOI GRGCYC 2 cut(s) 335, 587
Fsp4HI GCNGC 3 cut(s) 310, 533, 666
FspBI CTAG 1 cut(s) 252
GluI GCNGC 3 cut(s) 310, 533, 666
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 2 cut(s) 427, 502
HinfI GANTC 1 cut(s) 481
HphI GGTGA 2 cut(s) 176, 646
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 526, 582, 645
Hpy188III TCNNGA 5 cut(s) 80, 292, 369, 499, 546
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 228, 327, 346, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 620
HpyF3I CTNAG 5 cut(s) 290, 383, 536, 557, 579
Hsp92II CATG 2 cut(s) 427, 502
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 76, 240, 247
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 2 cut(s) 330, 619
Lsp1109I GCAGC 3 cut(s) 296, 519, 652
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 90, 386, 652
MalI GATC 3 cut(s) 78, 242, 249
MboI GATC 3 cut(s) 76, 240, 247
MboII GAAGA 9 cut(s) 44, 65, 68, 75, 174, 209, 212, 476, 539
MflI RGATCY 2 cut(s) 76, 247
MhlI GDGCHC 4 cut(s) 223, 335, 376, 587
MluCI AATT 2 cut(s) 172, 348
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 641
MnlI CCTC 3 cut(s) 366, 585, 588
MroXI GAANNNNTTC 1 cut(s) 520
MseI TTAA 3 cut(s) 125, 149, 278
MslI CAYNNNNRTG 2 cut(s) 428, 497
MspA1I CMGCKG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 371, 620
NdeII GATC 3 cut(s) 76, 240, 247
NlaIII CATG 2 cut(s) 427, 502
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 90, 652
NspI RCATGY 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 498
PciI ACATGT 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 522
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 520
PflFI GACNNNGTC 1 cut(s) 569
PkrI GCNGC 3 cut(s) 311, 534, 667
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PscI ACATGT 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 76, 247
PsyI GACNNNGTC 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 3 cut(s) 43, 323, 399
RsaNI GTAC 3 cut(s) 42, 322, 398
RseI CAYNNNNRTG 2 cut(s) 428, 497
SacI GAGCTC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 3 cut(s) 125, 149, 278
SatI GCNGC 3 cut(s) 310, 533, 666
Sau3AI GATC 3 cut(s) 76, 240, 247
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 4 cut(s) 223, 335, 376, 587
SetI ASST 8 cut(s) 147, 335, 393, 534, 554, 558, 616, 625
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 428, 497
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 2 cut(s) 172, 348
SsiI CCGC 1 cut(s) 298
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 436
TaqI TCGA 2 cut(s) 185, 370
TasI AATT 2 cut(s) 172, 348
TatI WGTACW 1 cut(s) 321
Tru1I TTAA 3 cut(s) 125, 149, 278
Tru9I TTAA 3 cut(s) 125, 149, 278
TscAI CASTG 4 cut(s) 33, 223, 594, 643
TseFI GTSAC 2 cut(s) 90, 652
TseI GCWGC 3 cut(s) 309, 532, 665
Tsp45I GTSAC 2 cut(s) 90, 652
TspDTI ATGAA 3 cut(s) 222, 477, 515
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 4 cut(s) 33, 223, 594, 643
Tth111I GACNNNGTC 1 cut(s) 569
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.