Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

44293196 .. 44294162

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCTCACTCATCGAAATTTATTACATCGGATAAGAAACCTGCGGGATGTTGTACCTGCTGAAATTGGGGACAGATTTCTTAGTATGCTTCCACCATGGCATGCCTATGAACGAGCTGCTGAGTATTTCACATTTACATATGGAATTGAACAAGTATACACAACTGTGAAGAACTTGAAGGATGATCTGCGACATTGTCAACCAAATTATGTCGTTTCGGTTCCTTTAGTGTATGAGACACTTTACGGGGGGATCCGAAACAAATTTCTACAAGATCTAAAGCTCGTAAGCTTATTGCACTTTCATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

103

Amino Acids

12.2

Weight (kDa)

8.79

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 86	1.8e-09	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	48, 64
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	247, 260
AcsI	RAATTY	2 cut(s)	16, 263
AfaI	GTAC	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	149, 178
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	116, 283, 291
AluI	AGCT	3 cut(s)	116, 283, 291
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	247, 260
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	16, 263
BamHI	GGATCC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	48, 64
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	222, 254
BsaJI	CCNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	52, 187
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	184, 252, 274
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	222, 254
BspMI	ACCTGC	2 cut(s)	48, 64
BspPI	GGATC	2 cut(s)	247, 260
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	184, 252, 274
BssNAI	GTATAC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	80, 120
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	52, 187
BstKTI	GATC	3 cut(s)	187, 255, 277
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	184, 252, 274
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	252, 274
BstYI	RGATCY	2 cut(s)	252, 274
BstZ17I	GTATAC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	52, 187
BveI	ACCTGC	2 cut(s)	48, 64
Cac8I	GCNNGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	96, 101
CviJI	RGCY	3 cut(s)	116, 283, 291
CviKI_1	RGCY	3 cut(s)	116, 283, 291
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	80, 120
DpnI	GATC	3 cut(s)	186, 254, 276
DpnII	GATC	3 cut(s)	184, 252, 274
Eco130I	CCWWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	99, 104
FaiI	YATR	9 cut(s)	86, 97, 102, 108, 139, 141, 157, 210, 234
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	95, 100
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	59, 194
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	99, 104
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	157, 200
Hpy188I	TCNGA	2 cut(s)	30, 257
Hpy8I	GTNNAC	2 cut(s)	157, 200
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	80, 120
Hsp92II	CATG	2 cut(s)	99, 104
Kzo9I	GATC	3 cut(s)	184, 252, 274
LpnPI	CCDG	2 cut(s)	53, 69
Lsp1109I	GCAGC	1 cut(s)	103
MalI	GATC	3 cut(s)	186, 254, 276
MboI	GATC	3 cut(s)	184, 252, 274
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	252, 274
MluCI	AATT	5 cut(s)	16, 63, 144, 205, 263
MslI	CAYNNNNRTG	2 cut(s)	105, 164
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	184, 252, 274
NlaIII	CATG	2 cut(s)	99, 104
NlaIV	GGNNCC	2 cut(s)	222, 254
NspI	RCATGY	1 cut(s)	104
OliI	CACNNNNGTG	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	222, 254
PsuI	RGATCY	2 cut(s)	252, 274
PsyI	GACNNNGTC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	105, 164
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	184, 252, 274
SetI	ASST	5 cut(s)	42, 58, 118, 285, 293
SmiMI	CAYNNNNRTG	2 cut(s)	105, 164
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	5 cut(s)	16, 63, 144, 205, 263
SsiI	CCGC	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	13
TasI	AATT	5 cut(s)	16, 63, 144, 205, 263
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	123, 293
Tth111I	GACNNNGTC	1 cut(s)	195
XapI	RAATTY	2 cut(s)	16, 263
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.