Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

30422718 .. 30425850

Gene Structure 3133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTGTAAGCCAGTCAACTGCTAGACCAACAGGTCAAGGATATGACTCCATTATTCCAGATGCTCAAGATGCCATCTCTGATCCTTTGACAGAGAAAATAGCTGAAAAAGTGGGTAAATGTGTGGATCGAGCAATATGTGGAGGCCATGGAGAAGGCGATACTGATAGGGCAAGACGGCCATGGGAGATTGTACCTAGAGGTCACAAGATTGGGAAACCAGAGCCGTTGTTCAAGGAATTGAGTGGAAAGAAGAAACAACAAGCCACAAAATCTGCAACTGAAGCAGAGATTTCCATATCTAGACTAGATATTAGTGTCGGCCTCATTACAAAAGCTCAGAAGCATCCTGATGCTGATGCACTTTATGTGGAAGAGATTGATGTTGGCGAAGGACAGCCTAGAACAGTTGTCAGTGGACTAGTCAGGTTTATACCTCTTGAAGAAATGCAGGTATGCGTCCTTTGCAACCTGAAGCCAGCGACCATGCGGGGTATTAAATCACAAGCGATGGTTCTTGCTGCTTCAAATAGTGACCACACCGCGAATATGGCTAGCACTGAAAATCATGTGCCTGCCAGAAATCGATTCTTTACAGCGACTATTGCAAACACTTCTCTGTTCCCAAATCCTTCCTCAAGCAGTCAGTACACAGTATCTGTTTGCGGTGTTTCAGACAATCTTCGACGTCCATGCATGGATGGATTTATACACAGTTTTATTCCTGACTGGGGCATCGTTCAGGTTGAGTTGGTTGATCCACCAAAATCTGCTCAAGTTGGGGAGAGAATTACATTTCCGGGGTTCCAAGGTGAGCCTGATGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAACCCTACAGGTAGATTTGCACAGTAACCCTGAGCTAGTCGCATGCTACAAAGATATTCCCCTCACTACATCAGCAGGTGTTTGCACTGTTAAATCTATTCGTGGTGGGTCAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

324

Amino Acids

35.13

Weight (kDa)

6.4

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_bind	PF01588	105 - 192	1e-25	Putative tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	920
AasI	GACNNNNNNGTC	1 cut(s)	33
AatII	GACGTC	1 cut(s)	691
Acc36I	ACCTGC	2 cut(s)	442, 920
AccII	CGCG	1 cut(s)	545
AciI	CCGC	3 cut(s)	490, 543, 666
AclWI	GGATC	3 cut(s)	77, 135, 752
AcoI	YGGCCR	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	303, 494
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	2 cut(s)	195, 650
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	4 cut(s)	235, 443, 528, 832
AhlI	ACTAGT	1 cut(s)	421
AluBI	AGCT	3 cut(s)	104, 338, 889
AluI	AGCT	3 cut(s)	104, 338, 889
AlwI	GGATC	3 cut(s)	77, 135, 752
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	3 cut(s)	145, 179, 322
ApeKI	GCWGC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	1 cut(s)	824
AsuNHI	GCTAGC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	3 cut(s)	83, 505, 695
BceAI	ACGGC	2 cut(s)	194, 211
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BcnI	CCSGG	1 cut(s)	801
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	8 cut(s)	24, 198, 303, 308, 402, 422, 555, 890
BfmI	CTRYAG	1 cut(s)	860
BfuAI	ACCTGC	2 cut(s)	442, 920
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	801
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	1 cut(s)	801
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	6 cut(s)	52, 61, 343, 349, 355, 744
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	739
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	3 cut(s)	51, 622, 759
BpuMI	CCSGG	1 cut(s)	801
Bsa29I	ATCGAT	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	688
BsaJI	CCNNGG	4 cut(s)	148, 182, 800, 808
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	13, 734
BseCI	ATCGAT	1 cut(s)	586
BseDI	CCNNGG	4 cut(s)	148, 182, 800, 808
BseGI	GGATG	2 cut(s)	346, 706
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	353, 876
BseNI	ACTGG	2 cut(s)	13, 734
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	3 cut(s)	147, 181, 324
BshVI	ATCGAT	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	800
BslI	CCNNNNNNNGG	1 cut(s)	731
BsnI	GGCC	3 cut(s)	147, 181, 324
Bsp143I	GATC	3 cut(s)	82, 127, 757
Bsp19I	CCATGG	2 cut(s)	148, 182
BspACI	CCGC	3 cut(s)	490, 543, 666
BspANI	GGCC	3 cut(s)	147, 181, 324
BspCNI	CTCAG	2 cut(s)	352, 877
BspDI	ATCGAT	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	806
BspMI	ACCTGC	2 cut(s)	442, 920
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	77, 135, 752
BsrI	ACTGG	2 cut(s)	13, 734
BssECI	CCNNGG	4 cut(s)	148, 182, 800, 808
BssMI	GATC	3 cut(s)	82, 127, 757
BssNI	GRCGYC	1 cut(s)	688
BssT1I	CCWWGG	3 cut(s)	148, 182, 808
Bst4CI	ACNGT	6 cut(s)	7, 409, 655, 716, 878, 943
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	688
BstC8I	GCNNGC	4 cut(s)	480, 556, 576, 898
BstDEI	CTNAG	2 cut(s)	339, 885
BstDSI	CCRYGG	2 cut(s)	148, 182
BstF5I	GGATG	2 cut(s)	346, 706
BstFNI	CGCG	1 cut(s)	545
BstKTI	GATC	3 cut(s)	85, 130, 760
BstMBI	GATC	3 cut(s)	82, 127, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 284, 465, 551, 605
BstNSI	RCATGY	1 cut(s)	900
BstSCI	CCNGG	1 cut(s)	799
BstSFI	CTRYAG	1 cut(s)	860
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	508
Bsu15I	ATCGAT	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	147, 181, 324
BsuTUI	ATCGAT	1 cut(s)	586
BtgI	CCRYGG	2 cut(s)	148, 182
BtgZI	GCGATG	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	346, 706
BtsIMutI	CAGTG	3 cut(s)	421, 558, 939
BveI	ACCTGC	2 cut(s)	442, 920
Cac8I	GCNNGC	4 cut(s)	480, 556, 576, 898
CaiI	CAGNNNCTG	1 cut(s)	659
ClaI	ATCGAT	1 cut(s)	586
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	194, 649
CviAII	CATG	7 cut(s)	149, 183, 487, 569, 693, 697, 897
CviQI	GTAC	2 cut(s)	194, 649
DdeI	CTNAG	2 cut(s)	339, 885
DpnI	GATC	3 cut(s)	84, 129, 759
DpnII	GATC	3 cut(s)	82, 127, 757
DrdI	GACNNNNNNGTC	1 cut(s)	33
DseDI	GACNNNNNNGTC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	3 cut(s)	148, 182, 808
Eco57I	CTGAAG	2 cut(s)	303, 494
EcoT14I	CCWWGG	3 cut(s)	148, 182, 808
EcoT22I	ATGCAT	1 cut(s)	698
ErhI	CCWWGG	3 cut(s)	148, 182, 808
FaeI	CATG	7 cut(s)	152, 186, 490, 572, 696, 700, 900
FatI	CATG	7 cut(s)	148, 182, 486, 568, 692, 696, 896
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	333, 713
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	8 cut(s)	24, 198, 303, 308, 402, 422, 555, 890
GluI	GCNGC	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	147, 181, 324
HapII	CCGG	1 cut(s)	800
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	7 cut(s)	152, 186, 490, 572, 696, 700, 900
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	47, 588
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	3 cut(s)	18, 419, 651
Hpy188I	TCNGA	3 cut(s)	82, 342, 676
Hpy188III	TCNNGA	6 cut(s)	59, 68, 303, 350, 440, 725
Hpy8I	GTNNAC	3 cut(s)	18, 419, 651
Hpy99I	CGWCG	1 cut(s)	690
HpyAV	CCTTC	4 cut(s)	149, 386, 642, 838
HpyCH4III	ACNGT	6 cut(s)	7, 409, 655, 716, 878, 943
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	8 cut(s)	278, 362, 451, 468, 608, 696, 874, 939
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 284, 465, 551, 605
HpyF3I	CTNAG	2 cut(s)	339, 885
HpySE526I	ACGT	1 cut(s)	688
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	7 cut(s)	152, 186, 490, 572, 696, 700, 900
Kzo9I	GATC	3 cut(s)	82, 127, 757
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	6 cut(s)	52, 61, 343, 349, 355, 744
MaeI	CTAG	8 cut(s)	24, 198, 303, 308, 402, 422, 555, 890
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	3 cut(s)	203, 533, 878
MalI	GATC	3 cut(s)	84, 129, 759
MboI	GATC	3 cut(s)	82, 127, 757
MboII	GAAGA	5 cut(s)	265, 386, 455, 674, 853
MluCI	AATT	3 cut(s)	239, 789, 966
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	6 cut(s)	137, 194, 335, 447, 646, 926
Mph1103I	ATGCAT	1 cut(s)	698
MseI	TTAA	2 cut(s)	498, 945
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	801
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	5 cut(s)	71, 284, 465, 551, 605
NciI	CCSGG	1 cut(s)	801
NcoI	CCATGG	2 cut(s)	148, 182
NdeII	GATC	3 cut(s)	82, 127, 757
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	7 cut(s)	152, 186, 490, 572, 696, 700, 900
NlaIV	GGNNCC	1 cut(s)	806
NmuCI	GTSAC	2 cut(s)	203, 533
NsiI	ATGCAT	1 cut(s)	698
NspI	RCATGY	1 cut(s)	900
PaeI	GCATGC	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	195, 650
RsaNI	GTAC	2 cut(s)	194, 649
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	498, 945
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	82, 127, 757
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	801
SfaNI	GCATC	6 cut(s)	52, 61, 343, 349, 355, 744
SfcI	CTRYAG	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	66, 637, 774
SmoI	CTYRAG	3 cut(s)	66, 637, 774
SpeI	ACTAGT	1 cut(s)	421
SphI	GCATGC	1 cut(s)	900
Sse9I	AATT	3 cut(s)	239, 789, 966
SsiI	CCGC	3 cut(s)	490, 543, 666
SspMI	CTAG	8 cut(s)	24, 198, 303, 308, 402, 422, 555, 890
StyD4I	CCNGG	1 cut(s)	799
StyI	CCWWGG	3 cut(s)	148, 182, 808
TaaI	ACNGT	6 cut(s)	7, 409, 655, 716, 878, 943
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	3 cut(s)	130, 586, 685
TasI	AATT	3 cut(s)	239, 789, 966
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	2 cut(s)	498, 945
Tru9I	TTAA	2 cut(s)	498, 945
TscAI	CASTG	3 cut(s)	421, 565, 946
TseFI	GTSAC	2 cut(s)	203, 533
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	2 cut(s)	203, 533
TspRI	CASTG	3 cut(s)	421, 565, 946
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	900
XspI	CTAG	8 cut(s)	24, 198, 303, 308, 402, 422, 555, 890
ZraI	GACGTC	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.