Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8167426.1

Orthogroup ID

OG0005551

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 660

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8167426.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

atggtagctcaggatgaaaggcttagagccacctctgagatcctaaacagcatgaaaatcattaagttacaaacatgggaagagaaattcaaaaactcggttgatgcccttcgcgaaagagagttcaaaccattggctgaggcacaatttgaaaaggcttatggaactgtcatgtattggatggcaccaaccatcatctcttcggttatttttctaggatgcattgttttcaacagtgctcctctaaatgcaagtactatatatattcacagttctagcatcattgaggcacaatttcaaaaggcttatggaactgtcatgtattggatggcaccaaccatcatctcttcggttgtttttctaggatgcattgttttcaacagtgctcctgtaaatgcaagtactatattcacagttctagcatcattgaaaagcatgggggaacctgtcaggtttataccggaagcactttcagttatgatacaagtcaaggtctcgtttgatcggctgaatttttttctgcttgataatgagctaaaggatagtgaaataaggaaagtcccatcacagaattcagatgagagcttaaaaatagaaagtggcacgttcagctgggatcctgaactaacaacgatcccaactctgagagatgtgaattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

219

Amino Acids

24.68

Weight (kDa)

5.17

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005551)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G168200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321081 RchiOBHm_Chr4g0435371
rosa_multiflora	Rmu_co8167426.1_g000001 Rmu_sc0003064.1_g000010 Rmu_sc0020014.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035980 Rroxscaffold_4G00318240 Rroxscaffold_4G00318250
rosa_rugosa	Rorug01G0378200 Rorug01G0378300 Rorug03G0029300 Rorug03G0029300 Rorug03G0190400 Rorug03G0190400 Rorug05G0449400 Rorug07G0304200 Rorug07G0304300 Rorug07G0304400 Rorug07G0304500
rosa_samantha	Rh1DG144000 Rh2AG292500 Rh2AG430900 Rh5CG218900 Rh5CG219000 Rh7AG329600 Rh7CG209800
rosa_wichuraiana	Rw3G004340 Rw6G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	184, 331
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	4 cut(s)	34, 611, 624, 628
AcsI	RAATTY	4 cut(s)	86, 511, 571, 655
AfaI	GTAC	2 cut(s)	256, 403
AgsI	TTSAA	7 cut(s)	91, 127, 152, 232, 299, 379, 430
AluBI	AGCT	4 cut(s)	8, 535, 585, 612
AluI	AGCT	4 cut(s)	8, 535, 585, 612
Alw21I	GWGCWC	2 cut(s)	241, 388
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	4 cut(s)	34, 611, 624, 628
ApoI	RAATTY	4 cut(s)	86, 511, 571, 655
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	2 cut(s)	184, 331
Bbv12I	GWGCWC	2 cut(s)	241, 388
BbvCI	CCTCAGC	1 cut(s)	138
BccI	CCATC	5 cut(s)	175, 200, 322, 347, 571
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	4 cut(s)	215, 276, 362, 419
BmcAI	AGTACT	2 cut(s)	256, 403
BmiI	GGNNCC	4 cut(s)	186, 333, 444, 618
BmsI	GCATC	5 cut(s)	94, 209, 288, 356, 431
Bpu10I	CCTNAGC	2 cut(s)	9, 138
BsaI	GGTCTC	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	460
BseGI	GGATG	5 cut(s)	19, 186, 224, 333, 371
BseMII	CTCAG	4 cut(s)	23, 27, 129, 635
BseRI	GAGGAG	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	184, 331
BsiHKAI	GWGCWC	2 cut(s)	241, 388
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	545
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	241, 388
Bsp143I	GATC	4 cut(s)	39, 502, 616, 633
Bsp68I	TCGCGA	1 cut(s)	114
BspCNI	CTCAG	4 cut(s)	22, 28, 130, 636
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	186, 333, 444, 618
BspPI	GGATC	4 cut(s)	34, 611, 624, 628
BspT107I	GGYRCC	2 cut(s)	184, 331
BspTNI	GGTCTC	1 cut(s)	499
BssMI	GATC	4 cut(s)	39, 502, 616, 633
Bst4CI	ACNGT	6 cut(s)	169, 236, 272, 316, 383, 415
Bst6I	CTCTTC	3 cut(s)	75, 205, 352
BstDEI	CTNAG	5 cut(s)	9, 23, 36, 138, 644
BstF5I	GGATG	5 cut(s)	19, 186, 224, 333, 371
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	42, 505, 619, 636
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	4 cut(s)	39, 502, 616, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	39, 616
BstYI	RGATCY	2 cut(s)	39, 616
BtsCI	GGATG	5 cut(s)	19, 186, 224, 333, 371
BtsIMutI	CAGTG	2 cut(s)	241, 388
BtuMI	TCGCGA	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	255, 402
CviAII	CATG	5 cut(s)	52, 75, 172, 319, 436
CviQI	GTAC	2 cut(s)	255, 402
DdeI	CTNAG	5 cut(s)	9, 23, 36, 138, 644
DpnI	GATC	4 cut(s)	41, 504, 618, 635
DpnII	GATC	4 cut(s)	39, 502, 616, 633
Eam1104I	CTCTTC	3 cut(s)	75, 205, 352
EarI	CTCTTC	3 cut(s)	75, 205, 352
Eco31I	GGTCTC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	571
EcoT22I	ATGCAT	2 cut(s)	224, 371
FaeI	CATG	5 cut(s)	55, 78, 175, 322, 439
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	5 cut(s)	51, 74, 171, 318, 435
FokI	GGATG	5 cut(s)	26, 193, 231, 340, 378
FspBI	CTAG	4 cut(s)	215, 276, 362, 419
GsaI	CCCAGC	1 cut(s)	616
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	5 cut(s)	55, 78, 175, 322, 439
HpaII	CCGG	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	37, 577, 645
Hpy188III	TCNNGA	3 cut(s)	11, 113, 620
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	6 cut(s)	169, 236, 272, 316, 383, 415
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	222, 251, 369, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	5 cut(s)	9, 23, 36, 138, 644
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	5 cut(s)	55, 78, 175, 322, 439
Kzo9I	GATC	4 cut(s)	39, 502, 616, 633
LmnI	GCTCC	2 cut(s)	244, 391
LpnPI	CCDG	6 cut(s)	402, 436, 459, 474, 598, 633
LweI	GCATC	5 cut(s)	94, 209, 288, 356, 431
MaeI	CTAG	4 cut(s)	215, 276, 362, 419
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	4 cut(s)	41, 504, 618, 635
MboI	GATC	4 cut(s)	39, 502, 616, 633
MboII	GAAGA	3 cut(s)	92, 192, 339
MflI	RGATCY	2 cut(s)	39, 616
MhlI	GDGCHC	2 cut(s)	241, 388
MluCI	AATT	6 cut(s)	86, 146, 293, 511, 571, 655
MnlI	CCTC	4 cut(s)	43, 133, 252, 280
Mph1103I	ATGCAT	2 cut(s)	224, 371
MseI	TTAA	2 cut(s)	63, 587
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	609
NdeII	GATC	4 cut(s)	39, 502, 616, 633
NlaIII	CATG	5 cut(s)	55, 78, 175, 322, 439
NlaIV	GGNNCC	4 cut(s)	186, 333, 444, 618
NruI	TCGCGA	1 cut(s)	114
NsiI	ATGCAT	2 cut(s)	224, 371
PspFI	CCCAGC	1 cut(s)	612
PspN4I	GGNNCC	4 cut(s)	186, 333, 444, 618
PsuI	RGATCY	2 cut(s)	39, 616
PvuII	CAGCTG	1 cut(s)	612
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	2 cut(s)	256, 403
RsaNI	GTAC	2 cut(s)	255, 402
SaqAI	TTAA	2 cut(s)	63, 587
Sau3AI	GATC	4 cut(s)	39, 502, 616, 633
ScaI	AGTACT	2 cut(s)	256, 403
SduI	GDGCHC	2 cut(s)	241, 388
SetI	ASST	9 cut(s)	10, 35, 448, 455, 495, 537, 587, 608, 614
SfaNI	GCATC	5 cut(s)	94, 209, 288, 356, 431
Sse9I	AATT	6 cut(s)	86, 146, 293, 511, 571, 655
SspMI	CTAG	4 cut(s)	215, 276, 362, 419
TaaI	ACNGT	6 cut(s)	169, 236, 272, 316, 383, 415
TaiI	ACGT	1 cut(s)	608
TasI	AATT	6 cut(s)	86, 146, 293, 511, 571, 655
TatI	WGTACW	2 cut(s)	254, 401
Tru1I	TTAA	2 cut(s)	63, 587
Tru9I	TTAA	2 cut(s)	63, 587
TscAI	CASTG	2 cut(s)	241, 388
TspDTI	ATGAA	2 cut(s)	30, 68
TspRI	CASTG	2 cut(s)	241, 388
XapI	RAATTY	4 cut(s)	86, 511, 571, 655
XspI	CTAG	4 cut(s)	215, 276, 362, 419
ZrmI	AGTACT	2 cut(s)	256, 403
Zsp2I	ATGCAT	2 cut(s)	224, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.