Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Reverse (-)

8944251 .. 8944638

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGAGGAAACAACAGACACAAGAAATCTTCTTTCTCATTCTTCAGCTTCTTCAAGTCTCGGAGGCCTCACCGAGGAGAAGAGATAGAGGATTCATATTTGAGTACAACAAAGGTGTGGCCTAGTGTGGAGGATAGAGGTCGATGGGTAGCTGAGCCTGGAATTGACAACAAAGCTGCTGATTTCATTGGCAGAATCCACAAGAACATGGTCTGGGAGTCGGATTGCAAAACATTAACTGTAAACCCAGCAGCAGGAAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

88

Amino Acids

10.06

Weight (kDa)

9.25

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	74, 254
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	48, 152, 176
AluI	AGCT	3 cut(s)	48, 152, 176
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	65, 119
ApeKI	GCWGC	2 cut(s)	176, 251
AsuHPI	GGTGA	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	163, 263
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	123, 265
BisI	GCNGC	2 cut(s)	177, 252
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	178, 253
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 254
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	74, 254
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	163, 263
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	67, 121
BslI	CCNNNNNNNGG	2 cut(s)	74, 254
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	67, 121
Bsp1720I	GCTNAGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	67, 121
BspCNI	CTCAG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	163, 263
BsuRI	GGCC	2 cut(s)	67, 121
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	6 cut(s)	48, 67, 121, 152, 157, 176
CviKI_1	RGCY	6 cut(s)	48, 67, 121, 152, 157, 176
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	97, 209
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	177, 252
Fsp4HI	GCNGC	2 cut(s)	177, 252
FspBI	CTAG	2 cut(s)	123, 265
GluI	GCNGC	2 cut(s)	177, 252
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	67, 121
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	3 cut(s)	92, 195, 218
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	63, 223
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	211
LpnPI	CCDG	5 cut(s)	144, 171, 199, 240, 261
Lsp1109I	GCAGC	2 cut(s)	163, 263
MaeI	CTAG	2 cut(s)	123, 265
MboII	GAAGA	4 cut(s)	21, 34, 43, 92
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	57, 68, 78, 82, 124, 131
MseI	TTAA	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NlaIII	CATG	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	92, 195
PkrI	GCNGC	2 cut(s)	178, 253
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	177, 252
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	5 cut(s)	50, 117, 142, 154, 178
Sse9I	AATT	1 cut(s)	162
SseBI	AGGCCT	1 cut(s)	67
SspMI	CTAG	2 cut(s)	123, 265
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	162
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	92, 195
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	2 cut(s)	176, 251
TspDTI	ATGAA	2 cut(s)	84, 175
XagI	CCTNNNNNAGG	1 cut(s)	72
XspI	CTAG	2 cut(s)	123, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.