Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

22937522 .. 22943188

Gene Structure 5667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAGAGGGTATTCGGTGCCAAGAAAGACAAAGAGCCTCCTCCTTCTGTTGGAGATGCCTCCGATAGGATTAATAAAAGAGGCGATACAGTGGATGAGAAGATCAAGAAGCTTGATGTTGAACTCAATAGATACAAAGAGCAGATCAAGAAGACAAGGCCTGGCCCTGCTCAGGAAGCTGTTAAGTCCAGAGCCATGAGGGTTCTCAAGCAAAAGCGAATGTATGAAGGACAACGTGACATGCTCTATAATCAGACATTTAACCTCGATCAAGTTGCGTTTGCTTCGGAGGGTATCAAAGATGCTCAGCAAACTGAGATGACAGCTCTGAAATCTGCGAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATTCAAGAGACGCTTGGTAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAGGAACTTATGGGTGAGTTGGATGCTCTAGAAGCAGACATGGGTATGGAAACTGAATCTGATGGGGTACCATCCTATCTCCAACCTGATCAGGAATCCGATTTACATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGCCCCAGCTGGAAGATCCAATGGCCAGGCTGAGGACGAATTGGGTTTACCTGCTGTCCCTCGGGCAACACTTCGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

238

Amino Acids

26.45

Weight (kDa)

4.77

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	13 - 207	3.3e-44	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
Acc65I	GGTACC	1 cut(s)	553
AccB1I	GGYRCC	2 cut(s)	17, 553
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 667
AgsI	TTSAA	4 cut(s)	122, 352, 380, 440
AjnI	CCWGG	2 cut(s)	160, 660
AluBI	AGCT	6 cut(s)	112, 179, 326, 459, 601, 644
AluI	AGCT	6 cut(s)	112, 179, 326, 459, 601, 644
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	645
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	3 cut(s)	158, 163, 658
ApeKI	GCWGC	2 cut(s)	632, 635
ApoI	RAATTY	1 cut(s)	435
AseI	ATTAAT	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	164, 412
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	660
BanI	GGYRCC	2 cut(s)	17, 553
BanII	GRGCYC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	603
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	644, 647
BccI	CCATC	4 cut(s)	403, 412, 542, 565
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	162, 662
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	633, 636
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	634, 637
Bme1390I	CCNGG	2 cut(s)	162, 662
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	2 cut(s)	164, 412
BmiI	GGNNCC	2 cut(s)	19, 555
BmrFI	CCNGG	2 cut(s)	162, 662
BmsI	GCATC	3 cut(s)	46, 292, 499
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	2 cut(s)	171, 666
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 667
BseBI	CCWGG	2 cut(s)	162, 662
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	4 cut(s)	100, 427, 514, 557
BseLI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 667
BseMII	CTCAG	4 cut(s)	185, 306, 320, 657
BseRI	GAGGAG	2 cut(s)	30, 500
BseXI	GCAGC	2 cut(s)	644, 647
BseYI	CCCAGC	1 cut(s)	640
BshFI	GGCC	3 cut(s)	160, 165, 660
BshNI	GGYRCC	2 cut(s)	17, 553
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	696
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 667
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	160, 165, 660
BsoBI	CYCGRG	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	102, 144, 268, 574, 650
Bsp1720I	GCTNAGC	1 cut(s)	306
BspANI	GGCC	3 cut(s)	160, 165, 660
BspCNI	CTCAG	4 cut(s)	184, 307, 319, 658
BspLI	GGNNCC	2 cut(s)	19, 555
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	17, 553
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	5 cut(s)	102, 144, 268, 574, 650
Bst2UI	CCWGG	2 cut(s)	162, 662
Bst4CI	ACNGT	2 cut(s)	91, 370
BstDEI	CTNAG	4 cut(s)	171, 306, 315, 666
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	100, 427, 514, 557
BstKTI	GATC	5 cut(s)	105, 147, 271, 577, 653
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	5 cut(s)	102, 144, 268, 574, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 518, 607, 641
BstNI	CCWGG	2 cut(s)	162, 662
BstNSI	RCATGY	2 cut(s)	244, 632
BstSCI	CCNGG	2 cut(s)	160, 660
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	644, 647
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	160, 165, 660
BtsCI	GGATG	4 cut(s)	100, 427, 514, 557
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	164, 412
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	5 cut(s)	196, 241, 526, 593, 629
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	4 cut(s)	171, 306, 315, 666
DpnI	GATC	5 cut(s)	104, 146, 270, 576, 652
DpnII	GATC	5 cut(s)	102, 144, 268, 574, 650
DraIII	CACNNNGTG	1 cut(s)	710
EaeI	YGGCCR	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	160, 660
EcoT38I	GRGCYC	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	5 cut(s)	199, 244, 529, 596, 632
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	5 cut(s)	195, 240, 525, 592, 628
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	633, 636
FokI	GGATG	4 cut(s)	107, 434, 521, 544
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	633, 636
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	2 cut(s)	633, 636
GsaI	CCCAGC	1 cut(s)	644
HaeIII	GGCC	3 cut(s)	160, 165, 660
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	199, 244, 529, 596, 632
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	376, 542, 581
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	6 cut(s)	64, 255, 289, 330, 547, 586
Hpy188III	TCNNGA	9 cut(s)	106, 148, 173, 189, 380, 440, 470, 515, 578
Hpy8I	GTNNAC	1 cut(s)	683
HpyAV	CCTTC	3 cut(s)	54, 221, 621
HpyCH4III	ACNGT	2 cut(s)	91, 370
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	397, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 518, 607, 641
HpyF3I	CTNAG	4 cut(s)	171, 306, 315, 666
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	5 cut(s)	199, 244, 529, 596, 632
KpnI	GGTACC	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	5 cut(s)	102, 144, 268, 574, 650
Lsp1109I	GCAGC	2 cut(s)	644, 647
LweI	GCATC	3 cut(s)	46, 292, 499
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	104, 146, 270, 576, 652
MboI	GATC	5 cut(s)	102, 144, 268, 574, 650
MboII	GAAGA	4 cut(s)	16, 112, 163, 660
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	5 cut(s)	347, 391, 435, 604, 674
MluNI	TGGCCA	1 cut(s)	660
MmeI	TCCRAC	3 cut(s)	31, 486, 592
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	4 cut(s)	72, 183, 261, 372
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	162, 662
MvaI	CCWGG	2 cut(s)	162, 662
MwoI	GCNNNNNNNGC	4 cut(s)	176, 518, 607, 641
NdeII	GATC	5 cut(s)	102, 144, 268, 574, 650
NlaIII	CATG	5 cut(s)	199, 244, 529, 596, 632
NlaIV	GGNNCC	2 cut(s)	19, 555
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	2 cut(s)	244, 632
PceI	AGGCCT	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	376, 542, 581
PkrI	GCNGC	2 cut(s)	634, 637
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	160, 660
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	2 cut(s)	160, 660
PspN4I	GGNNCC	2 cut(s)	19, 555
PspPI	GGNCC	2 cut(s)	164, 412
PsuI	RGATCY	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	4 cut(s)	72, 183, 261, 372
SatI	GCNGC	2 cut(s)	633, 636
Sau3AI	GATC	5 cut(s)	102, 144, 268, 574, 650
Sau96I	GGNCC	2 cut(s)	164, 412
ScrFI	CCNGG	2 cut(s)	162, 662
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	3 cut(s)	46, 292, 499
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	347, 391, 435, 604, 674
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	160, 660
TaaI	ACNGT	2 cut(s)	91, 370
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	347, 391, 435, 604, 674
TfiI	GAWTC	3 cut(s)	376, 542, 581
Tru1I	TTAA	4 cut(s)	72, 183, 261, 372
Tru9I	TTAA	4 cut(s)	72, 183, 261, 372
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	632, 635
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	17, 240, 377, 447
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	2 cut(s)	244, 632
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.