Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

33349915 .. 33353545

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGAGGTGGAAAAGACAAAAATAATGATACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAAGCCGCGCCCTGGATCACATTCTCATCAAGGACAAGGATATCCCCCACAAGGATATGCACCACCCGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGGCGGGTATCCTCCCTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGTGGATACCCTCCTTCAGATGGCTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCTCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCCAGCTATCCTGCCCCTAGTGGATATCCACCAGCCGGCTATCCTGCCCCTAACGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGTAATCCAACCTTCCATTTAGTGGTCTTATATAATACAAAGTTAAATATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

17.06

Weight (kDa)

7.88

Isoelectric Point (pI)

71.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	2 cut(s)	419, 475
AccII	CGCG	1 cut(s)	88
AciI	CCGC	4 cut(s)	86, 165, 183, 201
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	91, 427
AluBI	AGCT	3 cut(s)	357, 419, 440
AluI	AGCT	3 cut(s)	357, 419, 440
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	2 cut(s)	147, 148
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	248, 292, 442
BciT130I	CCWGG	2 cut(s)	93, 429
BciVI	GTATCC	5 cut(s)	180, 198, 216, 233, 288
BcnI	CCSGG	2 cut(s)	147, 148
BfaI	CTAG	2 cut(s)	336, 369
BfuI	GTATCC	5 cut(s)	180, 198, 216, 233, 288
BisI	GCNGC	2 cut(s)	72, 86
BlsI	GCNGC	2 cut(s)	73, 87
Bme1390I	CCNGG	4 cut(s)	93, 147, 148, 429
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	4 cut(s)	93, 147, 148, 429
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	147, 148
BsaJI	CCNNGG	2 cut(s)	91, 146
Bse118I	RCCGGY	2 cut(s)	320, 386
BseBI	CCWGG	2 cut(s)	93, 429
BseDI	CCNNGG	2 cut(s)	91, 146
BseRI	GAGGAG	2 cut(s)	255, 288
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	147, 321, 387
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	4 cut(s)	86, 165, 183, 201
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	2 cut(s)	320, 386
BssAI	RCCGGY	2 cut(s)	320, 386
BssECI	CCNNGG	2 cut(s)	91, 146
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	93, 429
Bst4CI	ACNGT	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	322, 355, 388
BstEII	GGTNACC	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	93, 429
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	4 cut(s)	91, 145, 146, 427
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	58
BsuI	GTATCC	5 cut(s)	180, 198, 216, 233, 288
Cac8I	GCNNGC	3 cut(s)	322, 355, 388
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	320, 386
Cfr13I	GGNCC	1 cut(s)	431
Cfr9I	CCCGGG	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	151
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eco32I	GATATC	5 cut(s)	122, 311, 344, 377, 410
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	91, 427
EcoRV	GATATC	5 cut(s)	122, 311, 344, 377, 410
FaiI	YATR	6 cut(s)	138, 305, 447, 484, 486, 503
FauI	CCCGC	3 cut(s)	158, 176, 194
Fnu4HI	GCNGC	2 cut(s)	72, 86
Fsp4HI	GCNGC	2 cut(s)	72, 86
FspBI	CTAG	2 cut(s)	336, 369
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	72, 86
HapII	CCGG	3 cut(s)	147, 321, 387
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	147, 321, 387
Hpy188I	TCNGA	2 cut(s)	217, 253
Hpy188III	TCNNGA	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	168, 258, 475
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	154
KroI	GCCGGC	2 cut(s)	320, 386
KroNI	GCCGGC	2 cut(s)	322, 388
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	336, 369
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	485
MroNI	GCCGGC	2 cut(s)	320, 386
MseI	TTAA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	147, 321, 387
MspR9I	CCNGG	4 cut(s)	93, 147, 148, 429
MvaI	CCWGG	2 cut(s)	93, 429
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	68
NaeI	GCCGGC	2 cut(s)	322, 388
NciI	CCSGG	2 cut(s)	147, 148
NdeII	GATC	1 cut(s)	95
NgoMIV	GCCGGC	2 cut(s)	320, 386
NlaIV	GGNNCC	1 cut(s)	152
PdiI	GCCGGC	2 cut(s)	322, 388
PflMI	CCANNNNNTGG	2 cut(s)	419, 475
PkrI	GCNGC	2 cut(s)	73, 87
Psp6I	CCWGG	2 cut(s)	91, 427
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	91, 427
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	2 cut(s)	72, 86
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	4 cut(s)	93, 147, 148, 429
SetI	ASST	7 cut(s)	10, 359, 421, 433, 442, 457, 467
SinI	GGWCC	1 cut(s)	431
SmaI	CCCGGG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SsiI	CCGC	4 cut(s)	86, 165, 183, 201
SspMI	CTAG	2 cut(s)	336, 369
StyD4I	CCNGG	4 cut(s)	91, 145, 146, 427
TaaI	ACNGT	1 cut(s)	221
TauI	GCSGC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseI	GCWGC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	420
TspMI	CCCGGG	1 cut(s)	146
Van91I	CCANNNNNTGG	2 cut(s)	419, 475
VpaK11BI	GGWCC	1 cut(s)	431
XmaI	CCCGGG	1 cut(s)	146
XspI	CTAG	2 cut(s)	336, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.