Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

37084907 .. 37085344

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGAAACCAAATGAAAGATCCTGCAATGCGGAAGATGTTGTCATCAATGATGAAGAATATGAGTCCAGACATGTTGGCAAACATGAGTGAGCAATTTGGTTTGAATCTTTCCCGGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCATTTTCACCAGAGTCCTTGGACAAAATGATGCAATGGATGGATAGGATGAATTCAAAGAGGAGTGGAACGTGCAAGGAAGACAAAGAATTGGCTGCTGGGGAAATCCGGTTTGATTTTGGCAATAGTAATGATCATTCTTGCAGTAATCCTTCATTGGTTGGGATACATTGGTGGGTAGACTGTGATTATGCTCGTGGTCTTGAAAGATCGATTCAAAGTCCAAACCAGATAAATCTTGTCGAAAGAGAATATGTACCTAGGTCGCTAGTTGTAGTAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

145

Amino Acids

16.7

Weight (kDa)

6.3

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	2 cut(s)	31, 125
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	202, 431
AfaI	GTAC	1 cut(s)	408
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	106, 207, 356, 368
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	202, 431
AspA2I	CCTAGG	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	115, 116
AsuHPI	GGTGA	1 cut(s)	150
AvaI	CYCGRG	1 cut(s)	114
AvrII	CCTAGG	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	141, 237
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	184
BciVI	GTATCC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	115, 116
BfaI	CTAG	2 cut(s)	411, 419
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	1 cut(s)	246
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	115, 116
BmeT110I	CYCGRG	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	115, 116
BmsI	GCATC	2 cut(s)	112, 171
BpiI	GAAGAC	2 cut(s)	141, 237
BpuMI	CCSGG	2 cut(s)	115, 116
Bsa29I	ATCGAT	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	114, 168, 410
BsaWI	WCCGGW	1 cut(s)	258
Bse3DI	GCAATG	3 cut(s)	33, 150, 191
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	114, 168, 410
BseGI	GGATG	2 cut(s)	195, 204
BseMI	GCAATG	3 cut(s)	33, 150, 191
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	115, 259
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	19, 283, 359
BspACI	CCGC	2 cut(s)	31, 125
BspDI	ATCGAT	1 cut(s)	362
BspPI	GGATC	1 cut(s)	14
BsrDI	GCAATG	3 cut(s)	33, 150, 191
BssECI	CCNNGG	3 cut(s)	114, 168, 410
BssMI	GATC	3 cut(s)	19, 283, 359
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	168, 410
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	195, 204
BstKTI	GATC	3 cut(s)	22, 286, 362
BstMBI	GATC	3 cut(s)	19, 283, 359
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 140
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	113, 114
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	2 cut(s)	141, 237
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	195, 204
Cfr9I	CCCGGG	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	2 cut(s)	73, 85
CviJI	RGCY	2 cut(s)	134, 245
CviKI_1	RGCY	2 cut(s)	134, 245
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	3 cut(s)	21, 285, 361
DpnII	GATC	3 cut(s)	19, 283, 359
Eco130I	CCWWGG	2 cut(s)	168, 410
Eco88I	CYCGRG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	168, 410
ErhI	CCWWGG	2 cut(s)	168, 410
FaeI	CATG	2 cut(s)	76, 88
FaiI	YATR	5 cut(s)	62, 74, 86, 342, 405
FatI	CATG	2 cut(s)	72, 84
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	202, 211
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	411, 419
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	252
HapII	CCGG	2 cut(s)	115, 259
Hin1II	CATG	2 cut(s)	76, 88
HinfI	GANTC	4 cut(s)	64, 106, 164, 364
HpaII	CCGG	2 cut(s)	115, 259
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	68, 353
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	26, 184, 225, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 140
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	76, 88
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	19, 283, 359
LpnPI	CCDG	7 cut(s)	36, 81, 128, 174, 234, 272, 392
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	112, 171
MaeI	CTAG	2 cut(s)	411, 419
MaeII	ACGT	1 cut(s)	221
MalI	GATC	3 cut(s)	21, 285, 361
MboI	GATC	3 cut(s)	19, 283, 359
MboII	GAAGA	5 cut(s)	46, 67, 131, 141, 242
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	4 cut(s)	95, 202, 239, 431
MlyI	GAGTC	2 cut(s)	73, 173
MnlI	CCTC	1 cut(s)	204
MspI	CCGG	2 cut(s)	115, 259
MspR9I	CCNGG	2 cut(s)	115, 116
MwoI	GCNNNNNNNGC	2 cut(s)	131, 140
NciI	CCSGG	2 cut(s)	115, 116
NdeII	GATC	3 cut(s)	19, 283, 359
NlaIII	CATG	2 cut(s)	76, 88
NspI	RCATGY	1 cut(s)	76
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	106, 364
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	72, 172
PpsI	GAGTC	2 cut(s)	72, 172
PscI	ACATGT	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	3 cut(s)	19, 283, 359
SchI	GAGTC	2 cut(s)	73, 173
ScrFI	CCNGG	2 cut(s)	115, 116
SetI	ASST	4 cut(s)	136, 224, 412, 416
SfaNI	GCATC	2 cut(s)	112, 171
SmaI	CCCGGG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	95, 202, 239, 431
SsiI	CCGC	2 cut(s)	31, 125
SspMI	CTAG	2 cut(s)	411, 419
StyD4I	CCNGG	2 cut(s)	113, 114
StyI	CCWWGG	2 cut(s)	168, 410
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	362, 393
TasI	AATT	4 cut(s)	95, 202, 239, 431
TfiI	GAWTC	2 cut(s)	106, 364
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	5 cut(s)	29, 68, 141, 215, 294
TspMI	CCCGGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	202, 431
XceI	RCATGY	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	114
XmaJI	CCTAGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	411, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.