RchiOBHm_Chr1g0367051

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003209
Physical Location & Seq
Reverse (-)
57454154 .. 57455332
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
ATGATGGCGGTCAATGTTCAAAAGACAAACAGCAAGATGAGCAGTCCTTTGTTCTATGAATTGAAGAAGAAAGCCTCTTCCTTCTTAAAAGAGAAGATCAGAACTGCGCGTCTGGCGCTGACTGATGTAACACCTGCAGAGCTAATGACGGAAGAAGCTACAAATGAAAATTCATGGCCACCAGACACACGTACCATTGGGGTAATATCCAGGGCTGCCTTTGACGTTGATGATTACTGGAGGATTGTGGAGATTCTGCATAGGAGGTTAATGATTTCTATGTGCATGCTGTTGTCGAACTTTGATAGAAAGAATTGGCGAGGCTCTTACAAGGCTCTAATTCTATTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGTTGATATCGATGTCATCAAGCAGATGGGAAGGTTTCAGCACATTGATGAAAAAGGATTTAACTGGGGCATGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTGTTTCTTAAAGAAGAGAGAGCCAGAGCTCGTAATCTAACTCGTGGAATACAAGGGTTCGGGAGCTTCAGTCAGCAGCATTCTCTCACAGATTCAAGCTTCAAGGAGCTATCTCGTAAAACGTATGAGAGGTGCAATTCACACTACACTGATCATCAGAGTCAGGAAGATAAGTCATTTGACTTAAAGGAGAATTTCTTGGTGAAGAAACAACCGCAGATTGGTGATCAAGACATCATCTCATCGAAACCTGAAATGAATCTCAACATAGGGGATCACCCATTTTGCCAGAATGAGCATCAGAGGGAAGAATCCCTTCTTTCTTCTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

283

Amino Acids

32.9

Weight (kDa)

6.73

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 44 - 172 4.2e-30 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 8, 731
AclWI GGATC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 169, 709
AcuI CTGAAG 1 cut(s) 568
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 4 cut(s) 20, 64, 612, 619
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 7 cut(s) 142, 158, 502, 545, 582, 615, 625
AluI AGCT 7 cut(s) 142, 158, 502, 545, 582, 615, 625
Alw21I GWGCWC 2 cut(s) 498, 547
Alw26I GTCTC 2 cut(s) 370, 504
AlwI GGATC 1 cut(s) 798
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 215, 592
ApoI RAATTY 2 cut(s) 169, 709
Asp700I GAANNNNTTC 2 cut(s) 354, 831
AspLEI GCGC 2 cut(s) 109, 118
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 3 cut(s) 730, 752, 785
AvaII GGWCC 1 cut(s) 368
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 547
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 2 cut(s) 498, 547
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 202, 604
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 2 cut(s) 667, 742
BcoDI GTCTC 2 cut(s) 370, 504
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 216, 593
BlsI GCNGC 2 cut(s) 217, 594
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 823
BmuI ACTGGG 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 210, 364
BsaXI ACNNNNNCTCC 4 cut(s) 501, 531, 571, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse1I ACTGG 2 cut(s) 242, 464
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 210, 364
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 242, 464
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 202, 604
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 405
BsiHKAI GWGCWC 2 cut(s) 498, 547
BslI CCNNNNNNNGG 1 cut(s) 737
BsmAI GTCTC 2 cut(s) 370, 504
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 498, 547
Bsp143I GATC 4 cut(s) 96, 667, 742, 790
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 2 cut(s) 8, 731
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 376
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 798
BsrI ACTGG 2 cut(s) 242, 464
BssECI CCNNGG 2 cut(s) 210, 364
BssMI GATC 4 cut(s) 96, 667, 742, 790
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 2 cut(s) 82, 525
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 359, 384
BstDSI CCRYGG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 109, 118
BstKTI GATC 4 cut(s) 99, 670, 745, 793
BstMAI GTCTC 2 cut(s) 370, 504
BstMBI GATC 4 cut(s) 96, 667, 742, 790
BstMWI GCNNNNNNNGC 3 cut(s) 39, 113, 115
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 202, 604
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 513, 663
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 2 cut(s) 109, 118
Cfr13I GGNCC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 192
CviAII CATG 4 cut(s) 174, 286, 365, 466
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 2 cut(s) 359, 384
DpnI GATC 4 cut(s) 98, 669, 744, 792
DpnII GATC 4 cut(s) 96, 667, 742, 790
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 82, 525
EarI CTCTTC 2 cut(s) 82, 525
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 547
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 4 cut(s) 177, 289, 368, 469
FaiI YATR 9 cut(s) 57, 175, 261, 281, 287, 366, 467, 642, 785
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 4 cut(s) 173, 285, 364, 465
FbaI TGATCA 2 cut(s) 667, 742
Fnu4HI GCNGC 2 cut(s) 216, 593
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 2 cut(s) 216, 593
GlaI GCGC 2 cut(s) 108, 117
GluI GCNGC 2 cut(s) 216, 593
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 109, 118
Hin1II CATG 4 cut(s) 177, 289, 368, 469
Hin6I GCGC 2 cut(s) 107, 116
HinP1I GCGC 2 cut(s) 107, 116
HindIII AAGCTT 2 cut(s) 500, 613
HinfI GANTC 5 cut(s) 253, 608, 676, 775, 827
HphI GGTGA 3 cut(s) 730, 752, 785
Hpy188I TCNGA 5 cut(s) 101, 487, 675, 819, 844
Hpy188III TCNNGA 3 cut(s) 577, 680, 746
HpyAV CCTTC 4 cut(s) 91, 365, 420, 842
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 3 cut(s) 190, 225, 638
HpyCH4V TGCA 4 cut(s) 137, 259, 285, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 113, 115
HpyF3I CTNAG 2 cut(s) 359, 384
HpySE526I ACGT 3 cut(s) 190, 225, 638
Hsp92II CATG 4 cut(s) 177, 289, 368, 469
HspAI GCGC 2 cut(s) 107, 116
Ksp22I TGATCA 2 cut(s) 667, 742
Kzo9I GATC 4 cut(s) 96, 667, 742, 790
LmnI GCTCC 2 cut(s) 579, 622
Lsp1109I GCAGC 2 cut(s) 202, 604
LweI GCATC 1 cut(s) 823
MaeII ACGT 3 cut(s) 190, 225, 638
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 98, 669, 744, 792
MboI GATC 4 cut(s) 96, 667, 742, 790
MhlI GDGCHC 2 cut(s) 498, 547
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 6 cut(s) 59, 169, 313, 339, 652, 709
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 685
MnlI CCTC 9 cut(s) 85, 234, 258, 314, 379, 388, 468, 639, 813
Mox20I TGGCCA 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 354, 831
MscI TGGCCA 1 cut(s) 178
MseI TTAA 5 cut(s) 86, 269, 456, 525, 701
MslI CAYNNNNRTG 2 cut(s) 441, 470
Msp20I TGGCCA 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 39, 113, 115
NcoI CCATGG 1 cut(s) 364
NdeII GATC 4 cut(s) 96, 667, 742, 790
NlaIII CATG 4 cut(s) 177, 289, 368, 469
NspI RCATGY 1 cut(s) 289
PaeI GCATGC 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 142
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 2 cut(s) 354, 831
PfeI GAWTC 4 cut(s) 253, 608, 775, 827
PkrI GCNGC 2 cut(s) 217, 594
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
Ppu21I YACGTR 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspPI GGNCC 1 cut(s) 368
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 2 cut(s) 441, 470
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 86, 269, 456, 525, 701
SatI GCNGC 2 cut(s) 216, 593
Sau3AI GATC 4 cut(s) 96, 667, 742, 790
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 498, 547
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 441, 470
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SphI GCATGC 1 cut(s) 289
Sse9I AATT 6 cut(s) 59, 169, 313, 339, 652, 709
SsiI CCGC 2 cut(s) 8, 731
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 3 cut(s) 193, 228, 641
TaqI TCGA 3 cut(s) 296, 405, 761
TasI AATT 6 cut(s) 59, 169, 313, 339, 652, 709
TfiI GAWTC 4 cut(s) 253, 608, 775, 827
Tru1I TTAA 5 cut(s) 86, 269, 456, 525, 701
Tru9I TTAA 5 cut(s) 86, 269, 456, 525, 701
TscAI CASTG 2 cut(s) 520, 670
TseI GCWGC 2 cut(s) 215, 592
TspDTI ATGAA 5 cut(s) 72, 162, 180, 459, 788
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 520, 670
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 2 cut(s) 169, 709
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 354, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.