RchiOBHm_Chr1g0336421

Acyl-coenzyme A oxidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
28134921 .. 28135805
885 bp
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UTR
Exon/CDS
Intron
PRQ56437

Sequence Viewer

Length: 303 bp
ATGGGCAGAGCCATAAATGGTGAAAATGTGCTATTGGAGAAGTACTATTTAGTCAGTTATTCATCAAAATTACTAATAAATAATACATTTTTCTCTGACATCAGAGTAATTTCTAAAGCAGTGGAATATTTTAGGTTTTTAACACAGGTCAGCAAGGCACTTCTTGCAGAGTTTATGACAGCTCAAAAGAGAAGCAAACCATTTAAAGCTTTGGGATCAGAACATATGAATAAACCTTCCCCTGTCTTTCCATCTAACCTTACAAGTTCTACTCTCCAAAGTCTCGAATTTCAGCTACGTTGA

Protein Analysis

100

Amino Acids

11.41

Weight (kDa)

9.85

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 44
AluBI AGCT 3 cut(s) 182, 209, 295
AluI AGCT 3 cut(s) 182, 209, 295
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 32
BccI CCATC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 215
BspPI GGATC 1 cut(s) 223
BssMI GATC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 43
CviJI RGCY 4 cut(s) 11, 182, 209, 295
CviKI_1 RGCY 4 cut(s) 11, 182, 209, 295
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DraI TTTAAA 1 cut(s) 205
FaiI YATR 4 cut(s) 14, 176, 225, 227
FauNDI CATATG 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 207
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 97, 104, 220
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 298
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 2 cut(s) 131, 255
MaeII ACGT 1 cut(s) 298
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MluCI AATT 3 cut(s) 68, 108, 287
MseI TTAA 2 cut(s) 140, 204
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 225
NdeII GATC 1 cut(s) 215
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 140, 204
Sau3AI GATC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 44
SetI ASST 8 cut(s) 137, 150, 184, 211, 238, 261, 297, 301
SgeI CNNG 6 cut(s) 158, 166, 176, 254, 276, 296
Sse9I AATT 3 cut(s) 68, 108, 287
SspI AATATT 1 cut(s) 128
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 285
TasI AATT 3 cut(s) 68, 108, 287
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 2 cut(s) 140, 204
Tru9I TTAA 2 cut(s) 140, 204
TscAI CASTG 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 51, 242
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.