Rh4DG156100
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004873
Physical Location & Seq
Forward (+)
31246681 .. 31248906
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG156100.1

Sequence Viewer

Length: 456 bp
ATGGTTCTGCCTTTTCTGCGAAGGAGGTCGAAAATTATTGAAATTGTGGCAGCACATGACATTGTGTTCACACTTGCGCAGTCTGGTGTTTGTGCAGCGTTTAGCCGAGATGCAGAAACCAATCAGAGGATATGCTTTCTGAATGTCAGTCTCGACGAAGTTATAAGAAGCTTATTTTATAATAAAAACAATGACTCACTTATCACAGTTTCAGTTTATGCTTCAGACAATTTCAGTTCTTTGAAATGTAGAAGCATGAGGATTAACTCTCATGATACCGAGGATGACCTGACCATTGCAATTGTTTTGGCAGAAGAGGAAAAGCAGAAAAATGATGGCAAGCTGGGGAAAAGACTCTCCCACTTAGATTTGATTCCGCACACTCTCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCTACTCAAGACCATAAGAGGCTTTCAGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.11

Weight (kDa)

6.2

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 2 - 90 5.6e-42 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 164, 180
Acc16I TGCGCA 1 cut(s) 78
AciI CCGC 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 2 cut(s) 41, 244
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 171, 343
AluI AGCT 2 cut(s) 171, 343
Alw26I GTCTC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 50, 95
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 403
BbvI GCAGC 2 cut(s) 62, 107
BccI CCATC 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 2 cut(s) 51, 96
BlsI GCNGC 2 cut(s) 52, 97
BmgBI CACGTC 1 cut(s) 412
BmsI GCATC 2 cut(s) 100, 409
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 400
BseXI GCAGC 2 cut(s) 62, 107
BseYI CCCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 155
BspACI CCGC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 364, 386
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 62, 107
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 79
CviAII CATG 3 cut(s) 56, 256, 272
CviJI RGCY 4 cut(s) 105, 171, 343, 442
CviKI_1 RGCY 4 cut(s) 105, 171, 343, 442
DdeI CTNAG 2 cut(s) 364, 386
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 3 cut(s) 59, 259, 275
FaiI YATR 8 cut(s) 57, 133, 164, 180, 219, 257, 273, 435
FatI CATG 3 cut(s) 55, 255, 271
Fnu4HI GCNGC 2 cut(s) 51, 96
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 51, 96
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 51, 96
GsaI CCCAGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 79
Hin1II CATG 3 cut(s) 59, 259, 275
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 3 cut(s) 194, 354, 373
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 4 cut(s) 126, 141, 226, 448
Hpy188III TCNNGA 3 cut(s) 152, 272, 428
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 95, 113, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 364, 386
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 59, 259, 275
HspAI GCGC 1 cut(s) 77
LpnPI CCDG 5 cut(s) 69, 302, 329, 373, 420
Lsp1109I GCAGC 2 cut(s) 62, 107
LweI GCATC 2 cut(s) 100, 409
MaeII ACGT 1 cut(s) 411
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 300
MluCI AATT 4 cut(s) 33, 42, 229, 300
MlyI GAGTC 2 cut(s) 188, 348
MnlI CCTC 6 cut(s) 18, 120, 252, 274, 310, 432
MseI TTAA 1 cut(s) 264
MunI CAATTG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIII CATG 3 cut(s) 59, 259, 275
NmeAIII GCCGAG 1 cut(s) 131
NsbI TGCGCA 1 cut(s) 78
PagI TCATGA 1 cut(s) 271
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 2 cut(s) 52, 97
PleI GAGTC 2 cut(s) 188, 348
PpsI GAGTC 2 cut(s) 188, 348
PsiI TTATAA 2 cut(s) 164, 180
PspFI CCCAGC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 51, 96
SchI GAGTC 2 cut(s) 188, 348
SetI ASST 7 cut(s) 29, 173, 291, 345, 409, 414, 455
SfaNI GCATC 2 cut(s) 100, 409
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 4 cut(s) 33, 42, 229, 300
SsiI CCGC 1 cut(s) 377
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 29, 153
TasI AATT 4 cut(s) 33, 42, 229, 300
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 2 cut(s) 50, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.