Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Forward (+)

49305311 .. 49306245

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCATCGCTATAGATTAGTCATGTTAAAATTCTCACTGTTGTCTAAATTAGATGGATGCATTTTGCTTAAGCGAGCGGGATCTACTGAATCGCTTTGCTATGGAAGTGTCCCAACGACAAAAATAGGGAGAAAGCAAAGAGTACTAGGTCCTTCTGGTGAGTATTGTCTTCTTTTCAGTACAACTGCTCTCTCTTTCTCTCTCTCTAATTCATTTCATTACTCTTTCCAGTTCCAGAGTTATCAGCCTGCAGAGGATTTGGGAAGAGCTTTCTCAGATCGATCAATATTGCAAACCTTCATCAATGTAGAGGCAACATTACCTGTTGGTTCACTGAAGCTAAGAGTAACTGTTACTGACTTTAATGTCTTAGCTACGTTGAGGACCTTATATGCATTGAGTTGCTTGGAAGAGGTTGTGGCATTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

9.18

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	144, 181
AflII	CTTAAG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	269, 340, 374
AluI	AGCT	3 cut(s)	269, 340, 374
AlwI	GGATC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	149, 384
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	149, 384
BbsI	GAAGAC	1 cut(s)	161
BccI	CCATC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	10, 249
BfrI	CTTAAG	1 cut(s)	68
BmcAI	AGTACT	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	149, 384
BmgT120I	GGNCC	2 cut(s)	149, 384
BmsI	GCATC	2 cut(s)	13, 47
BpiI	GAAGAC	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	280
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	80, 277, 281
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	287
BspDI	ATCGAT	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	259
BspTI	CTTAAG	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	80, 277, 281
Bst4CI	ACNGT	2 cut(s)	39, 352
Bst6I	CTCTTC	2 cut(s)	259, 405
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	75, 249
BstDEI	CTNAG	3 cut(s)	274, 341, 370
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	83, 280, 284
BstMBI	GATC	3 cut(s)	80, 277, 281
BstSFI	CTRYAG	2 cut(s)	10, 249
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	280
BsuTUI	ATCGAT	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	35, 332
Cac8I	GCNNGC	2 cut(s)	75, 249
Cfr13I	GGNCC	2 cut(s)	149, 384
ClaI	ATCGAT	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	143, 180
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	247, 269, 340, 374
CviKI_1	RGCY	4 cut(s)	247, 269, 340, 374
CviQI	GTAC	2 cut(s)	143, 180
DdeI	CTNAG	3 cut(s)	274, 341, 370
DpnI	GATC	3 cut(s)	82, 279, 283
DpnII	GATC	3 cut(s)	80, 277, 281
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	259, 405
EarI	CTCTTC	2 cut(s)	259, 405
Eco47I	GGWCC	2 cut(s)	149, 384
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	149, 384
EcoT22I	ATGCAT	3 cut(s)	6, 62, 397
FaeI	CATG	1 cut(s)	25
FaiI	YATR	5 cut(s)	12, 23, 102, 391, 393
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	69
FspBI	CTAG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	277, 431
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	162, 307
HpyCH4III	ACNGT	2 cut(s)	39, 352
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	5 cut(s)	4, 60, 251, 292, 395
HpyF3I	CTNAG	3 cut(s)	274, 341, 370
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	80, 277, 281
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	141, 242, 248, 261, 336
LweI	GCATC	2 cut(s)	13, 47
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	346, 352
MalI	GATC	3 cut(s)	82, 279, 283
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	3 cut(s)	80, 277, 281
MboII	GAAGA	3 cut(s)	161, 276, 422
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	3 cut(s)	29, 47, 208
MnlI	CCTC	4 cut(s)	247, 304, 375, 406
Mph1103I	ATGCAT	3 cut(s)	6, 62, 397
MseI	TTAA	3 cut(s)	26, 69, 363
MspCI	CTTAAG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	422
NdeII	GATC	3 cut(s)	80, 277, 281
NlaIII	CATG	1 cut(s)	25
NsiI	ATGCAT	3 cut(s)	6, 62, 397
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	89
PpuMI	RGGWCCY	2 cut(s)	149, 384
Psp5II	RGGWCCY	2 cut(s)	149, 384
PspPI	GGNCC	2 cut(s)	149, 384
PspPPI	RGGWCCY	2 cut(s)	149, 384
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	144, 181
RsaNI	GTAC	2 cut(s)	143, 180
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	26, 69, 363
Sau3AI	GATC	3 cut(s)	80, 277, 281
Sau96I	GGNCC	2 cut(s)	149, 384
ScaI	AGTACT	1 cut(s)	144
SetI	ASST	9 cut(s)	151, 271, 299, 325, 342, 376, 380, 389, 417
SfaNI	GCATC	2 cut(s)	13, 47
SfcI	CTRYAG	2 cut(s)	10, 249
SinI	GGWCC	2 cut(s)	149, 384
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	29, 47, 208
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	39, 352
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	29, 47, 208
TatI	WGTACW	2 cut(s)	142, 179
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	26, 69, 363
Tru9I	TTAA	3 cut(s)	26, 69, 363
TscAI	CASTG	2 cut(s)	42, 339
TspDTI	ATGAA	3 cut(s)	201, 206, 289
TspRI	CASTG	2 cut(s)	42, 339
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	149, 384
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	144
Zsp2I	ATGCAT	3 cut(s)	6, 62, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.