Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Forward (+)

33396995 .. 33399859

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGTTCATTAACAGCGTTAAGAAGCTTCAACGACATGAAATCAGTTCCAAGCGTGACCGAGCTATCACTATGAGCGATGCCCGGGAGAGGTTTTACAATATTCATCTCCAGTATATACAATACATGGTGTCTGCTCTAAAAACTATACAATGTTGTACTCCATATCAGATAAACATGTCCAAGAAATTAAGATTAGATAATGTTGCTGCCATTAGGAAAGAAGTAAGCAGCCTCTGCAGGGAGCTACTACCTCATGCACTAGCCTTGATCATATTGTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

11.19

Weight (kDa)

9.76

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	90, 241
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	32, 283
AluBI	AGCT	3 cut(s)	28, 65, 247
AluI	AGCT	3 cut(s)	28, 65, 247
AlwNI	CAGNNNCTG	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	209, 231
AsuC2I	CCSGG	2 cut(s)	85, 86
AvaI	CYCGRG	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	196, 243
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	85, 86
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	210, 232
BlsI	GCNGC	2 cut(s)	211, 233
Bme1390I	CCNGG	2 cut(s)	85, 86
BmeT110I	CYCGRG	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	85, 86
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	85, 86
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 241
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	90, 241
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	196, 243
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	90, 241
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	83, 84
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	196, 243
BtgZI	GCGATG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	38, 127, 178, 257
CviJI	RGCY	5 cut(s)	28, 65, 234, 247, 266
CviKI_1	RGCY	5 cut(s)	28, 65, 234, 247, 266
CviQI	GTAC	1 cut(s)	159
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	84
FaeI	CATG	4 cut(s)	41, 130, 181, 260
FatI	CATG	4 cut(s)	37, 126, 177, 256
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	210, 232
Fsp4HI	GCNGC	2 cut(s)	210, 232
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	2 cut(s)	210, 232
GsuI	CTGGAG	1 cut(s)	95
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	4 cut(s)	41, 130, 181, 260
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	240, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	41, 130, 181, 260
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	98, 125, 226
Lsp1109I	GCAGC	2 cut(s)	196, 243
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	3 cut(s)	84, 245, 264
MseI	TTAA	3 cut(s)	12, 21, 191
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	85, 86
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	2 cut(s)	85, 86
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	4 cut(s)	41, 130, 181, 260
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	181
PciI	ACATGT	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	211, 233
PscI	ACATGT	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	12, 21, 191
SatI	GCNGC	2 cut(s)	210, 232
Sau3AI	GATC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	85, 86
SetI	ASST	5 cut(s)	30, 67, 95, 249, 256
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	238
SmaI	CCCGGG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	188
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	83, 84
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	12, 21, 191
Tru9I	TTAA	3 cut(s)	12, 21, 191
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	209, 231
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	54, 95
TspMI	CCCGGG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	84
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.