Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

53503207 .. 53505777

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG344100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCTTCCAGCTTCACAATTGGCAAATGGTAATGGGATCCAGCAAAACAAGGAAACACACTCCTGAACACTGCTGGTCTCTCCGTTGGACTACTAAGACAAGCTACATATACCATAGCTCATCTTGGATCATTCAGGTTGATGTTTTCACCAACTCTTCCGGAGCATGTGCTGCTTTTATTTCTAATATGGACGACAATAATGACAAAAGAGTAGTATTTCGTTATGTGTCATATCATCTACCAGCATGGTCAGTTAGCATACTGGCTGACTACAAGACTGCAGTATTTAACATAGCAAAGATGGCATCTGAAACTAAAGGCATGAAAGGTCTTAAGTGGGAGGTATTTGTGGAGAAAGCTGGGATCTGGGGTGAAGCTGACTTTGGATTTGTAGATCACATCAATACCACAAAAGTTACCACTACCTGTGGTATACAACTAAGCATATTTGTTGATGAAAATGAAGAGTTCTTAAAGAAAGGAAGCTCACCAGTACTTCTAATTGAATCAAAAGGCCATGCTCTCCATGCTTTTGTCAATGATGAACTTCAAGAAAATGTGGTTTCTATATTGAGCAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

196

Amino Acids

22.24

Weight (kDa)

7.09

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	47 - 101	3.8e-17	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	436
AccIII	TCCGGA	1 cut(s)	161
AclWI	GGATC	4 cut(s)	33, 46, 137, 374
AfaI	GTAC	1 cut(s)	498
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	509, 554
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	6 cut(s)	13, 105, 120, 362, 380, 489
AluI	AGCT	6 cut(s)	13, 105, 120, 362, 380, 489
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	4 cut(s)	33, 46, 137, 374
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AsuHPI	GGTGA	3 cut(s)	142, 386, 483
BamHI	GGATCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	270, 494
BseAI	TCCGGA	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	270, 494
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	519
Bso31I	GGTCTC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	38, 129, 366, 397
BspANI	GGCC	1 cut(s)	519
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	4 cut(s)	33, 46, 137, 374
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	270, 494
BssMI	GATC	4 cut(s)	38, 129, 366, 397
BssNAI	GTATAC	1 cut(s)	437
Bst1107I	GTATAC	1 cut(s)	437
Bst6I	CTCTTC	2 cut(s)	163, 462
BstAFI	CTTAAG	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	2 cut(s)	96, 443
BstKTI	GATC	4 cut(s)	41, 132, 369, 400
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	38, 129, 366, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 305, 530
BstNSI	RCATGY	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	38, 366
BstYI	RGATCY	2 cut(s)	38, 366
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	519
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	5 cut(s)	168, 249, 325, 521, 530
CviJI	RGCY	8 cut(s)	13, 105, 120, 269, 362, 380, 489, 519
CviKI_1	RGCY	8 cut(s)	13, 105, 120, 269, 362, 380, 489, 519
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	2 cut(s)	96, 443
DpnI	GATC	4 cut(s)	40, 131, 368, 399
DpnII	GATC	4 cut(s)	38, 129, 366, 397
Eam1104I	CTCTTC	2 cut(s)	163, 462
EarI	CTCTTC	2 cut(s)	163, 462
Eco31I	GGTCTC	1 cut(s)	84
FaeI	CATG	5 cut(s)	171, 252, 328, 524, 533
FatI	CATG	5 cut(s)	167, 248, 324, 520, 529
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	5 cut(s)	171, 252, 328, 524, 533
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	142, 386, 483
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	65, 162, 554
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 305, 530
HpyF3I	CTNAG	2 cut(s)	96, 443
Hsp92II	CATG	5 cut(s)	171, 252, 328, 524, 533
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	38, 129, 366, 397
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	4 cut(s)	40, 131, 368, 399
MboI	GATC	4 cut(s)	38, 129, 366, 397
MboII	GAAGA	2 cut(s)	150, 479
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	2 cut(s)	38, 366
MluCI	AATT	2 cut(s)	19, 504
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	337, 575
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	3 cut(s)	291, 336, 476
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	173, 305, 530
NdeII	GATC	4 cut(s)	38, 129, 366, 397
NlaIII	CATG	5 cut(s)	171, 252, 328, 524, 533
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	38, 366
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	291, 336, 476
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	38, 129, 366, 397
ScaI	AGTACT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	19, 504
TasI	AATT	2 cut(s)	19, 504
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	291, 336, 476
Tru9I	TTAA	3 cut(s)	291, 336, 476
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	4 cut(s)	341, 474, 480, 561
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	436
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.