Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Forward (+)

70098505 .. 70101732

Gene Structure 3228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGCAGAGCCATAAATGGTGAAAATGTGCTATTGGAGAAGTACTATTTAGTAAGTTATTCATCAAAATTACTAATAAATAATACATTTTTCTTTGACATCAGAGTAATTTCTAAAGCAGTGGAATATTTTAGGTTTTTAACACAGGTCAGCAAGGCACTTCTTGCAGAGTTTATGATAGCTCAAAAGAGAAGCAAACCATTTAAAGCTTTGGGATCAGAACATATGAATAAACCTTCCCCTGTCATTCCATCTAAGAGCAAGTCCACTCGTAGTCAAGAAATGTCAAGGTCGAGAAGTCAAGAATTCGACCAGTCAAGTTACTATTCACTGCCACTGGACATGGGTTTGCACCCGTTGTTTTTTTGCCCGGTCAACACTGTTCACACTGTTCACTGTTCACTCTACTGTTCACGTAAAAATAATGTTCATCGGTGGTATTTAAATGCACTGTTTCACGTACTGTTCATTAAAATACTGTTCATCTGCGCCACGCGTCAGGCTGCTGTCCCTCACTTCCCAAGCAGGCGCGTCTCCTTCTCCCCTGTGTTGCTGACGTCCCCCACGTTGTGTTTGCAGCCTTCCTTCTCCATGAGCTCATCTCTTTCTTGCCTGGGCATGAAAATAGTCATTCCCATGACTATTTTCTTGGCTGTAGTCAGGAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

223

Amino Acids

25.49

Weight (kDa)

9.89

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	560
AccII	CGCG	2 cut(s)	496, 531
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	557
AdeI	CACNNNGTG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	44, 462
AflIII	ACRYGT	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	3 cut(s)	182, 209, 597
AluI	AGCT	3 cut(s)	182, 209, 597
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	503, 577
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	491, 531
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	490, 589
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	538
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	2 cut(s)	504, 578
BlsI	GCNGC	2 cut(s)	505, 579
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	371, 614
BmrFI	CCNGG	2 cut(s)	371, 614
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	2 cut(s)	416, 460
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	313, 342
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	613
BseNI	ACTGG	2 cut(s)	313, 342
BseXI	GCAGC	2 cut(s)	490, 589
Bsh1236I	CGCG	2 cut(s)	496, 531
BsiHKAI	GWGCWC	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	2 cut(s)	494, 544
BsmAI	GTCTC	1 cut(s)	538
BsmBI	CGTCTC	1 cut(s)	538
BsmFI	GGGAC	2 cut(s)	494, 544
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	215
BspFNI	CGCG	2 cut(s)	496, 531
BspPI	GGATC	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	313, 342
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	7 cut(s)	382, 391, 398, 410, 453, 465, 480
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	2 cut(s)	416, 460
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	255
BstFNI	CGCG	2 cut(s)	496, 531
BstHHI	GCGC	2 cut(s)	491, 531
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	369, 612
BstSFI	CTRYAG	1 cut(s)	654
BstUI	CGCG	2 cut(s)	496, 531
BstV1I	GCAGC	2 cut(s)	490, 589
BtsI	GCAGTG	2 cut(s)	126, 329
BtsIMutI	CAGTG	7 cut(s)	126, 329, 335, 378, 387, 394, 449
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	2 cut(s)	491, 531
CseI	GACGC	2 cut(s)	485, 520
Csp6I	GTAC	2 cut(s)	43, 461
CviAII	CATG	4 cut(s)	343, 592, 619, 637
CviJI	RGCY	7 cut(s)	11, 182, 209, 503, 580, 597, 653
CviKI_1	RGCY	7 cut(s)	11, 182, 209, 503, 580, 597, 653
CviQI	GTAC	2 cut(s)	43, 461
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraI	TTTAAA	2 cut(s)	205, 444
DraIII	CACNNNGTG	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	538
FaeI	CATG	4 cut(s)	346, 595, 622, 640
FaiI	YATR	8 cut(s)	14, 176, 225, 227, 344, 593, 620, 638
FaqI	GGGAC	2 cut(s)	494, 544
FatI	CATG	4 cut(s)	342, 591, 618, 636
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	504, 578
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	2 cut(s)	504, 578
GlaI	GCGC	2 cut(s)	490, 530
GluI	GCNGC	2 cut(s)	504, 578
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	485, 520
HhaI	GCGC	2 cut(s)	491, 531
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	346, 595, 622, 640
Hin6I	GCGC	2 cut(s)	489, 529
HinP1I	GCGC	2 cut(s)	489, 529
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	207
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	6 cut(s)	267, 376, 385, 394, 401, 413
Hpy188I	TCNGA	2 cut(s)	104, 220
Hpy188III	TCNNGA	4 cut(s)	278, 294, 302, 661
Hpy8I	GTNNAC	6 cut(s)	267, 376, 385, 394, 401, 413
HpyAV	CCTTC	5 cut(s)	246, 547, 591, 595, 658
HpyCH4III	ACNGT	7 cut(s)	382, 391, 398, 410, 453, 465, 480
HpyCH4IV	ACGT	4 cut(s)	415, 459, 557, 566
HpyCH4V	TGCA	4 cut(s)	167, 352, 449, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	4 cut(s)	415, 459, 557, 566
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	346, 595, 622, 640
HspAI	GCGC	2 cut(s)	489, 529
Kzo9I	GATC	1 cut(s)	215
Lsp1109I	GCAGC	2 cut(s)	490, 589
MaeII	ACGT	4 cut(s)	415, 459, 557, 566
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	3 cut(s)	68, 108, 305
MluI	ACGCGT	1 cut(s)	494
MnlI	CCTC	1 cut(s)	522
MseI	TTAA	4 cut(s)	140, 204, 443, 471
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	371, 614
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	2 cut(s)	496, 531
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	4 cut(s)	346, 595, 622, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	505, 579
Ppu21I	YACGTR	2 cut(s)	416, 460
Psp124BI	GAGCTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
RsaI	GTAC	2 cut(s)	44, 462
RsaNI	GTAC	2 cut(s)	43, 461
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	140, 204, 443, 471
SatI	GCNGC	2 cut(s)	504, 578
Sau3AI	GATC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	371, 614
SduI	GDGCHC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	654
SmiI	ATTTAAAT	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	68, 108, 305
SspI	AATATT	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	369, 612
SwaI	ATTTAAAT	1 cut(s)	444
TaaI	ACNGT	7 cut(s)	382, 391, 398, 410, 453, 465, 480
TaiI	ACGT	4 cut(s)	418, 462, 560, 569
TaqI	TCGA	2 cut(s)	293, 309
TasI	AATT	3 cut(s)	68, 108, 305
TatI	WGTACW	1 cut(s)	42
Tru1I	TTAA	4 cut(s)	140, 204, 443, 471
Tru9I	TTAA	4 cut(s)	140, 204, 443, 471
TscAI	CASTG	7 cut(s)	126, 336, 342, 385, 394, 401, 456
TseI	GCWGC	2 cut(s)	503, 577
TspDTI	ATGAA	6 cut(s)	51, 242, 419, 457, 472, 635
TspRI	CASTG	7 cut(s)	126, 336, 342, 385, 394, 401, 456
XapI	RAATTY	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	558
ZrmI	AGTACT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.