Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

54529401 .. 54532150

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGACGACAATAATGACAAAAGAGTAGTATTTCGTTATGTGTCATATCATCTACCAGCATGGTCAGTTAGCATACTGGCTGACTACAAGACTGCAGTATTTAACATAGCAAAGATGGCATCTGAAACTAAAGGCATGAAAGGTCTTAAGTGGGAGGTATTTGTGGAGAAAGCTGGGATCTGGGGTGAAGCTGACTTTGGATTTGTAGATCACATCAATACCACAAAAGTTACCACTACCTGTGGTATACAACTAAGCATATTTGTTGATGAAAATGAAGAGTTCTTAAAGAAAGGAAGCTCACCAGTACTTCTAATTGAATCAAAAGGCCATGCTCTCCATGCTTTTGTCAATGATGAACTTCAAGAAAATGTGGTTTCTATATTGAGCAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

5.78

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	2 - 38	1.1e-09	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	320, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	173, 191, 300
AluI	AGCT	3 cut(s)	173, 191, 300
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuHPI	GGTGA	2 cut(s)	197, 294
BccI	CCATC	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	309
BmsI	GCATC	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	81, 305
BseNI	ACTGG	2 cut(s)	81, 305
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	177, 208
BspANI	GGCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	81, 305
BssMI	GATC	2 cut(s)	177, 208
BssNAI	GTATAC	1 cut(s)	248
Bst1107I	GTATAC	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	180, 211
BstMBI	GATC	2 cut(s)	177, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 341
BstSFI	CTRYAG	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	60, 136, 332, 341
CviJI	RGCY	5 cut(s)	80, 173, 191, 300, 330
CviKI_1	RGCY	5 cut(s)	80, 173, 191, 300, 330
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	179, 210
DpnII	GATC	2 cut(s)	177, 208
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
FaeI	CATG	4 cut(s)	63, 139, 335, 344
FatI	CATG	4 cut(s)	59, 135, 331, 340
FblI	GTMKAC	1 cut(s)	247
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	63, 139, 335, 344
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	197, 294
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 341
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	63, 139, 335, 344
Kzo9I	GATC	2 cut(s)	177, 208
LpnPI	CCDG	6 cut(s)	62, 69, 159, 166, 253, 318
LweI	GCATC	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	179, 210
MboI	GATC	2 cut(s)	177, 208
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	1 cut(s)	315
MnlI	CCTC	2 cut(s)	148, 386
MseI	TTAA	3 cut(s)	102, 147, 287
MspCI	CTTAAG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	116, 341
NdeII	GATC	2 cut(s)	177, 208
NlaIII	CATG	4 cut(s)	63, 139, 335, 344
PfeI	GAWTC	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	102, 147, 287
Sau3AI	GATC	2 cut(s)	177, 208
ScaI	AGTACT	1 cut(s)	309
SetI	ASST	6 cut(s)	145, 159, 175, 193, 242, 302
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	315
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	102, 147, 287
Tru9I	TTAA	3 cut(s)	102, 147, 287
TspDTI	ATGAA	4 cut(s)	152, 285, 291, 372
Vha464I	CTTAAG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.