Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Forward (+)

38848315 .. 38850947

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029446

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGAAGCAACCTAAAGCCAAGAAATTGGAGAATCTGGGCAAGGGCACCGTCACCCCCGTCCAGATCGCCTTCCTCGTCGACCAGTATCTCTTCGGTAATAGCTACACAGAAGCCCGCTTTGTTTTCAGAACTAAAACCTCCTCACTCTTCTCCAAGTCTCCGATTCAAGAGTCTGAGATTCTGAACGAGTACATAGCATTGAGGGAACAGAAGGTGCTTCGTGAAGCCAATGGCGACCCGAACAAGGCTGACGAGCCGTTCATGAGCTCCACCGAGCTTCATCTCTTCCCCTTAGTTTTTGCTCTTCCGACTCTCAAACGAGGTGGACTTAAAGAAGCTGATGCTTATGAAGATCTGAAGACAATCCAGGACGAAGATAAGGAATATCTTCATTCAACTCCTACTATGGTCAGCAAGGCACTTCTTGCAGAGTTTATAACGGCTCAGAAGAGAAGCAAACCATTTAAAGCTTTGGGATCAGAACATATGAATAAACCTTGCCCCGTCATTCCATCTAACCTTACAAGTTCTGCTCTCCAAAGTCTCGAATTTCAGATAGATGCATTTTGCTTAAGAGAGCAGGATCTACTGAATCGCTTTGCTATGGAAGTGTCCCAACTACAAAAACAGGGAGAAAGCAAAGAGTACTCGGTCCTTCCGATCATATCGTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

227

Amino Acids

25.53

Weight (kDa)

6.85

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	487, 594
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	194, 650
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	170, 399, 676
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	105, 270, 280, 341, 473
AluI	AGCT	5 cut(s)	105, 270, 280, 341, 473
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	165, 551
AlwI	GGATC	2 cut(s)	487, 594
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	655
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	2 cut(s)	244, 459
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	165, 551
BfrI	CTTAAG	1 cut(s)	574
BglII	AGATCT	1 cut(s)	355
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	334, 553
BpiI	GAAGAC	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	168, 461
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	165, 551
BsmFI	GGGAC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	50, 272
Bsp143I	GATC	5 cut(s)	66, 355, 479, 586, 663
BspACI	CCGC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	169, 460
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	487, 594
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	66, 355, 479, 586, 663
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	5 cut(s)	98, 155, 293, 312, 446
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	177, 295, 447
BstKTI	GATC	5 cut(s)	69, 358, 482, 589, 666
BstMAI	GTCTC	2 cut(s)	165, 551
BstMBI	GATC	5 cut(s)	66, 355, 479, 586, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	355, 586
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	2 cut(s)	355, 586
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	193, 649
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	2 cut(s)	193, 649
DdeI	CTNAG	3 cut(s)	177, 295, 447
DpnI	GATC	5 cut(s)	68, 357, 481, 588, 665
DpnII	GATC	5 cut(s)	66, 355, 479, 586, 663
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	5 cut(s)	98, 155, 293, 312, 446
EarI	CTCTTC	5 cut(s)	98, 155, 293, 312, 446
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	1 cut(s)	268
FaiI	YATR	9 cut(s)	197, 266, 351, 410, 440, 489, 491, 608, 668
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	125
FauNDI	CATATG	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	6 cut(s)	34, 166, 173, 181, 313, 595
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	82, 329
Hpy188III	TCNNGA	5 cut(s)	64, 170, 224, 265, 548
Hpy8I	GTNNAC	2 cut(s)	82, 329
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	82, 208, 668
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	431, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	177, 295, 447
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	66, 355, 479, 586, 663
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	7 cut(s)	23, 77, 98, 356, 383, 569, 617
LweI	GCATC	2 cut(s)	334, 553
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	5 cut(s)	68, 357, 481, 588, 665
MboI	GATC	5 cut(s)	66, 355, 479, 586, 663
MboII	GAAGA	9 cut(s)	85, 142, 280, 299, 365, 373, 383, 389, 463
MflI	RGATCY	2 cut(s)	355, 586
MhlI	GDGCHC	2 cut(s)	50, 272
MluCI	AATT	2 cut(s)	26, 551
MlyI	GAGTC	2 cut(s)	182, 307
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	86, 151, 154, 198, 317
Mph1103I	ATGCAT	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	3 cut(s)	333, 468, 575
MspCI	CTTAAG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	5 cut(s)	66, 355, 479, 586, 663
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	568
PagI	TCATGA	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 659
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	34, 166, 181, 595
PfoI	TCCNGGA	1 cut(s)	369
PleI	GAGTC	2 cut(s)	181, 307
PpsI	GAGTC	2 cut(s)	181, 307
PsiI	TTATAA	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	355, 586
RsaI	GTAC	2 cut(s)	194, 650
RsaNI	GTAC	2 cut(s)	193, 649
SacI	GAGCTC	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	333, 468, 575
Sau3AI	GATC	5 cut(s)	66, 355, 479, 586, 663
Sau96I	GGNCC	1 cut(s)	655
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	2 cut(s)	182, 307
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	50, 272
SfaNI	GCATC	2 cut(s)	334, 553
SinI	GGWCC	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	2 cut(s)	26, 551
SsiI	CCGC	1 cut(s)	118
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	81, 549
TaqII	GACCGA	1 cut(s)	643
TasI	AATT	2 cut(s)	26, 551
TatI	WGTACW	2 cut(s)	192, 648
TfiI	GAWTC	4 cut(s)	34, 166, 181, 595
Tru1I	TTAA	3 cut(s)	333, 468, 575
Tru9I	TTAA	3 cut(s)	333, 468, 575
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	5 cut(s)	253, 272, 366, 383, 506
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.