Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

4988293 .. 4992697

Gene Structure 4405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATATCTGATCCAGCAAAACAAGGAAATACAGTCCCGATGCCCGAACCATGTCCTTCCAGCTTCACAATTTACAAATGGTATTGGGATCCAGCAAAACAAGGAAACACACTCCCGAACACCGATGTTTATGCATATGATGGCATCGAAACTAAAGGCTTGAAAGGTCTTAAGTGGGAGGTATTTGTGGAGAAAGCTGGGATCCGGGGTGAAGCCGACTTTGTCAAAACTGGATTTGTAGATCACATCAATACCACAAAAGTTACCACTACCTGTGGTATACAACTAAGATTCCCTAATGGCAGCATATTTGTTGATGAAAATGAAGAGTTCTTAAAGAAAGGAAGCTCACCAGTACTTCTAATTGAATCAAAACGCCATGCTCTCCATGCTTTTGTCAATGATGAACTTCAAGATAAATTCAACGATATAGCCAAAGTCGACCTTCAAGAACTGCAAGGGCCTCTCGCCGCAACGGCCGACAAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

163

Amino Acids

18.11

Weight (kDa)

5.21

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	280, 441
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	5 cut(s)	5, 83, 96, 196, 209
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	1 cut(s)	357
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	163, 368, 413, 424, 449
AluBI	AGCT	3 cut(s)	63, 197, 348
AluI	AGCT	3 cut(s)	63, 197, 348
AlwI	GGATC	5 cut(s)	5, 83, 96, 196, 209
AoxI	GGCC	2 cut(s)	461, 477
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	221, 342
BamHI	GGATCC	2 cut(s)	88, 201
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcnI	CCSGG	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	304, 471
BlsI	GCNGC	2 cut(s)	305, 472
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	90, 203
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	30, 153
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	235, 353
BseDI	CCNNGG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	235, 353
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	463, 479
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	463, 479
Bsp143I	GATC	4 cut(s)	10, 88, 201, 241
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	463, 479
BspLI	GGNNCC	2 cut(s)	90, 203
BspPI	GGATC	5 cut(s)	5, 83, 96, 196, 209
BspTI	CTTAAG	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	235, 353
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	10, 88, 201, 241
BssNAI	GTATAC	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	321
BstAFI	CTTAAG	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	287
BstKTI	GATC	4 cut(s)	13, 91, 204, 244
BstMBI	GATC	4 cut(s)	10, 88, 201, 241
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 476, 485
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	88, 201
BstYI	RGATCY	2 cut(s)	88, 201
BstZ17I	GTATAC	1 cut(s)	281
BstZI	CGGCCG	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	463, 479
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	3 cut(s)	51, 380, 389
CviJI	RGCY	8 cut(s)	63, 159, 197, 215, 348, 434, 463, 479
CviKI_1	RGCY	8 cut(s)	63, 159, 197, 215, 348, 434, 463, 479
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	4 cut(s)	12, 90, 203, 243
DpnII	GATC	4 cut(s)	10, 88, 201, 241
EaeI	YGGCCR	1 cut(s)	477
EagI	CGGCCG	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	477
Eco32I	GATATC	1 cut(s)	6
Eco52I	CGGCCG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	136
FaeI	CATG	3 cut(s)	54, 383, 392
FaiI	YATR	9 cut(s)	52, 132, 136, 138, 281, 308, 381, 390, 431
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	50, 379, 388
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	2 cut(s)	280, 441
Fnu4HI	GCNGC	2 cut(s)	304, 471
Fsp4HI	GCNGC	2 cut(s)	304, 471
GluI	GCNGC	2 cut(s)	304, 471
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	463, 479
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	3 cut(s)	54, 383, 392
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	291, 368
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	221, 342
Hpy166II	GTNNAC	2 cut(s)	281, 442
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	37, 115, 413, 449
Hpy8I	GTNNAC	2 cut(s)	281, 442
HpyAV	CCTTC	2 cut(s)	66, 455
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	134, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 476, 485
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	54, 383, 392
Kzo9I	GATC	4 cut(s)	10, 88, 201, 241
LpnPI	CCDG	8 cut(s)	27, 73, 105, 183, 216, 218, 286, 366
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	30, 153
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	12, 90, 203, 243
MboI	GATC	4 cut(s)	10, 88, 201, 241
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	2 cut(s)	88, 201
MluCI	AATT	3 cut(s)	69, 363, 419
MnlI	CCTC	2 cut(s)	172, 474
Mph1103I	ATGCAT	1 cut(s)	136
MseI	TTAA	2 cut(s)	171, 335
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	389, 476, 485
NciI	CCSGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	4 cut(s)	10, 88, 201, 241
NlaIII	CATG	3 cut(s)	54, 383, 392
NlaIV	GGNNCC	2 cut(s)	90, 203
NsiI	ATGCAT	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	291, 368
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	305, 472
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	90, 203
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	88, 201
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	171, 335
SatI	GCNGC	2 cut(s)	304, 471
Sau3AI	GATC	4 cut(s)	10, 88, 201, 241
Sau96I	GGNCC	1 cut(s)	461
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	7 cut(s)	65, 169, 183, 199, 275, 350, 447
SfaNI	GCATC	2 cut(s)	30, 153
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	69, 363, 419
SsiI	CCGC	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	147, 441
TasI	AATT	3 cut(s)	69, 363, 419
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	2 cut(s)	291, 368
Tru1I	TTAA	2 cut(s)	171, 335
Tru9I	TTAA	2 cut(s)	171, 335
TseI	GCWGC	1 cut(s)	303
TspDTI	ATGAA	3 cut(s)	333, 339, 420
Tth111I	GACNNNGTC	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	280, 441
ZrmI	AGTACT	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.