Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

31756013 .. 31762867

Gene Structure 6855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGCTCAGCTTCATGAAGTCTAGCCGAGGTAAAAACTTTCTAGAACTCAGCTTCATGAAAGCTAGCCGAACTCTCCTTTCCTTCTATAACTCGGCTGCAAATCAAGCCGTGGCTTTCCTTTTTAAGGTAATTAGGCCTCAAGGAAGGATCAATCTTGGCCGCAGGGTTCTCTCTGCCTTAGATGCAAGGACTTTATACGAGTCGGCTTTACTAGCCGGAGTGTTCGTGCTATGCAACTCGATGAGTGAATGTGAAAGTGGTCTCTCCGTTGGACTACTAAGACAAGCTACATATACCACAGCTCATCTTGGGATCATTCAATTCCCTAATGGCAGCATATTTGTTGATGAAAATGAAGAGTTCTTAAAGAAAGGAAGCTCACCAGTACTTCTAATTGAATCAAAACGCCATGCTCTCCATGCTTTTGTCAATGATGAACTTCAAGGTTATTTTCTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

9.0

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	158, 323
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	323, 401, 446
AluBI	AGCT	7 cut(s)	7, 12, 54, 65, 290, 305, 381
AluI	AGCT	7 cut(s)	7, 12, 54, 65, 290, 305, 381
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	158, 323
AoxI	GGCC	2 cut(s)	137, 160
ApeKI	GCWGC	2 cut(s)	98, 336
AsuHPI	GGTGA	1 cut(s)	375
AsuNHI	GCTAGC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	85, 348
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	4 cut(s)	24, 44, 66, 215
BisI	GCNGC	3 cut(s)	99, 163, 337
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	3 cut(s)	100, 164, 338
BmcAI	AGTACT	1 cut(s)	390
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	28, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	28, 111
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	22, 64
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	85, 348
BshFI	GGCC	2 cut(s)	139, 162
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	139, 162
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	150, 315
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	139, 162
BspCNI	CTCAG	2 cut(s)	21, 63
BspHI	TCATGA	2 cut(s)	15, 57
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	158, 323
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	28, 111
BssMI	GATC	2 cut(s)	150, 315
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	8, 50, 181, 281
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	153, 318
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	150, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 185, 215, 422
BstV1I	GCAGC	2 cut(s)	85, 348
BsuRI	GGCC	2 cut(s)	139, 162
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	67
CciI	TCATGA	2 cut(s)	15, 57
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	4 cut(s)	16, 58, 413, 422
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	4 cut(s)	8, 50, 181, 281
DpnI	GATC	2 cut(s)	152, 317
DpnII	GATC	2 cut(s)	150, 315
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	4 cut(s)	19, 61, 416, 425
FatI	CATG	4 cut(s)	15, 57, 412, 421
Fnu4HI	GCNGC	3 cut(s)	99, 163, 337
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	99, 163, 337
FspBI	CTAG	4 cut(s)	24, 44, 66, 215
GluI	GCNGC	3 cut(s)	99, 163, 337
HaeIII	GGCC	2 cut(s)	139, 162
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	4 cut(s)	19, 61, 416, 425
HinfI	GANTC	2 cut(s)	203, 401
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	16, 44, 58
HpyAV	CCTTC	2 cut(s)	94, 141
HpyCH4V	TGCA	3 cut(s)	101, 188, 237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 185, 215, 422
HpyF3I	CTNAG	4 cut(s)	8, 50, 181, 281
Hsp92II	CATG	4 cut(s)	19, 61, 416, 425
Kzo9I	GATC	2 cut(s)	150, 315
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	151, 232, 399
Lsp1109I	GCAGC	2 cut(s)	85, 348
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	4 cut(s)	24, 44, 66, 215
MalI	GATC	2 cut(s)	152, 317
MboI	GATC	2 cut(s)	150, 315
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	132, 323, 396
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	23, 150
MseI	TTAA	3 cut(s)	126, 368, 463
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	107, 185, 215, 422
NdeII	GATC	2 cut(s)	150, 315
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	19, 61, 416, 425
NmeAIII	GCCGAG	2 cut(s)	53, 74
PagI	TCATGA	2 cut(s)	15, 57
PceI	AGGCCT	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	100, 164, 338
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	126, 368, 463
SatI	GCNGC	3 cut(s)	99, 163, 337
Sau3AI	GATC	2 cut(s)	150, 315
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	132, 323, 396
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	4 cut(s)	24, 44, 66, 215
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	132, 323, 396
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	126, 368, 463
Tru9I	TTAA	3 cut(s)	126, 368, 463
TseI	GCWGC	2 cut(s)	98, 336
TspDTI	ATGAA	7 cut(s)	4, 32, 46, 74, 366, 372, 453
TspGWI	ACGGA	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	125
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	4 cut(s)	24, 44, 66, 215
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.