Rh5AG465100
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004873
Physical Location & Seq
Reverse (-)
79734770 .. 79738222
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG465100.1

Sequence Viewer

Length: 228 bp
ATGGGGTTCGTTAACAGCGTTAAGAAGCTTCAACGACGTGAAATCAGTTCCAAGCGTGACCGAGCTATCACTATGTGCGATGCCCGGGAGAGGTTTTACAATATTCATCTCCAGCAAGCGAGCAAGCCACCTCTGGTCCTCCACCTCCGGTCCCCTCATCCGATTCTTTACGCCGGAGTGATCAGTAGCAAACATTATGAAGAGGCAATCAAAATCTGCTGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.74

Weight (kDa)

9.72

Isoelectric Point (pI)

80.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 32
AjiI CACGTC 1 cut(s) 38
AluBI AGCT 2 cut(s) 28, 65
AluI AGCT 2 cut(s) 28, 65
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 136, 150
AsuC2I CCSGG 2 cut(s) 85, 86
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 2 cut(s) 136, 150
BbvI GCAGC 1 cut(s) 206
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 2 cut(s) 85, 86
BfaI CTAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 85, 86
Bme18I GGWCC 2 cut(s) 136, 150
BmeT110I CYCGRG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 136, 150
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 85, 86
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 85, 86
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 85, 148, 174
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 84
Bsp143I GATC 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 117, 121, 125
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 83, 84
BstV1I GCAGC 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 3 cut(s) 117, 121, 125
Cfr13I GGNCC 2 cut(s) 136, 150
Cfr9I CCCGGG 1 cut(s) 84
CviJI RGCY 3 cut(s) 28, 65, 127
CviKI_1 RGCY 3 cut(s) 28, 65, 127
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 136, 150
Eco88I CYCGRG 1 cut(s) 84
FaiI YATR 2 cut(s) 74, 198
FaqI GGGAC 1 cut(s) 136
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 226
GluI GCNGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 95
HapII CCGG 3 cut(s) 85, 148, 174
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 163
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 85, 148, 174
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 98, 119, 125, 161, 187
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 226
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 212
MnlI CCTC 6 cut(s) 84, 141, 149, 155, 165, 196
MseI TTAA 2 cut(s) 12, 21
MspI CCGG 3 cut(s) 85, 148, 174
MspR9I CCNGG 2 cut(s) 85, 86
NciI CCSGG 2 cut(s) 85, 86
NdeII GATC 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 136, 150
SaqAI TTAA 2 cut(s) 12, 21
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 136, 150
ScrFI CCNGG 2 cut(s) 85, 86
SetI ASST 6 cut(s) 30, 40, 67, 95, 133, 147
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 2 cut(s) 136, 150
SmaI CCCGGG 1 cut(s) 86
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 226
StyD4I CCNGG 2 cut(s) 83, 84
TaiI ACGT 1 cut(s) 40
TaqII GACCGA 1 cut(s) 75
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 12, 21
Tru9I TTAA 2 cut(s) 12, 21
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 95, 213
TspMI CCCGGG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 136, 150
XmaI CCCGGG 1 cut(s) 84
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.