Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

24074802 .. 24079090

Gene Structure 4289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTCAGCAAGGCACTTCTTGCAGAGTTTATAACGGCTAAGAAGAGAAGCAAACCATTTAAAGCTTTGGGATCAGAACATATGAATAAACCTTGCCCCGTCATTCCATCTAACCTTACAAGTTCTGCTCTCCAAAGTCTCGAATTTCAGATGGATGCATTTTGCTTAAGAGAGCGGGATCTACTGAATCGCTTTGCTATGGAAGTGTCCCAACGACAAAAACAGGGAGAAAGCAAAGAGTACTCAGTCCTTCTGTTCCAGAGTTATCAGCCTGCAGAGGATTTGGGAAGAGCTTTCTCAGATCGATCAATATTGCAAACCTTCATCGATGTAGAGGCAACTGTACCTGTTGGTTCACTAAAGCTAAGAGTAACTGTTACTGACCTTGTGAAAATCTGTCTCTGCCACTTGTATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

139

Amino Acids

15.65

Weight (kDa)

8.72

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	175
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	2 cut(s)	79, 186
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	242, 345
AflII	CTTAAG	1 cut(s)	166
AluBI	AGCT	3 cut(s)	65, 293, 364
AluI	AGCT	3 cut(s)	65, 293, 364
Alw26I	GTCTC	2 cut(s)	143, 404
AlwI	GGATC	2 cut(s)	79, 186
ApoI	RAATTY	1 cut(s)	143
BccI	CCATC	2 cut(s)	115, 145
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	143, 404
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	242
BmsI	GCATC	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	304, 327
BseCI	ATCGAT	2 cut(s)	304, 327
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	258, 312
BshVI	ATCGAT	2 cut(s)	304, 327
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	143, 404
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	4 cut(s)	71, 178, 301, 305
BspACI	CCGC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	257, 311
BspDI	ATCGAT	2 cut(s)	304, 327
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	79, 186
BspQI	GCTCTTC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	175
BssMI	GATC	4 cut(s)	71, 178, 301, 305
Bst4CI	ACNGT	2 cut(s)	343, 376
Bst6I	CTCTTC	2 cut(s)	38, 283
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	4 cut(s)	39, 244, 298, 365
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	4 cut(s)	74, 181, 304, 308
BstMAI	GTCTC	2 cut(s)	143, 404
BstMBI	GATC	4 cut(s)	71, 178, 301, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	304, 327
BsuTUI	ATCGAT	2 cut(s)	304, 327
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	273
ClaI	ATCGAT	2 cut(s)	304, 327
Csp6I	GTAC	2 cut(s)	241, 344
CviJI	RGCY	5 cut(s)	38, 65, 271, 293, 364
CviKI_1	RGCY	5 cut(s)	38, 65, 271, 293, 364
CviQI	GTAC	2 cut(s)	241, 344
DdeI	CTNAG	4 cut(s)	39, 244, 298, 365
DpnI	GATC	4 cut(s)	73, 180, 303, 307
DpnII	GATC	4 cut(s)	71, 178, 301, 305
DraI	TTTAAA	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	38, 283
EarI	CTCTTC	2 cut(s)	38, 283
EcoT22I	ATGCAT	1 cut(s)	160
FaiI	YATR	5 cut(s)	32, 81, 83, 200, 414
FaqI	GGGAC	1 cut(s)	193
FauI	CCCGC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	81
FokI	GGATG	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	76, 150, 301
Hpy188III	TCNNGA	2 cut(s)	140, 259
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	260, 331
HpyCH4III	ACNGT	2 cut(s)	343, 376
HpyCH4V	TGCA	4 cut(s)	23, 158, 275, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	4 cut(s)	39, 244, 298, 365
Kzo9I	GATC	4 cut(s)	71, 178, 301, 305
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	209, 272, 285, 360
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	370, 376
MalI	GATC	4 cut(s)	73, 180, 303, 307
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	4 cut(s)	71, 178, 301, 305
MboII	GAAGA	2 cut(s)	55, 300
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	2 cut(s)	271, 328
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	2 cut(s)	60, 167
MslI	CAYNNNNRTG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	4 cut(s)	71, 178, 301, 305
NsiI	ATGCAT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	242, 345
RsaNI	GTAC	2 cut(s)	241, 344
RseI	CAYNNNNRTG	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	60, 167
Sau3AI	GATC	4 cut(s)	71, 178, 301, 305
ScaI	AGTACT	1 cut(s)	242
SetI	ASST	8 cut(s)	67, 94, 117, 295, 323, 349, 366, 387
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	175
SspI	AATATT	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	343, 376
TaqI	TCGA	3 cut(s)	141, 304, 327
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	60, 167
Tru9I	TTAA	2 cut(s)	60, 167
TspDTI	ATGAA	2 cut(s)	98, 313
Vha464I	CTTAAG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.