Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

23423638 .. 23428599

Gene Structure 4962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTCAGCAAGGCACTTCTTGCAGAGTTTATAACGGCTAAGAAGAGAAGCAAACCATTTAAAGCTTTGGGATCAGAACATATGAATAAACCTTGCCCCGTCATTCCATCTAACCTTACAAGTTCTGCTCTCCAAAGTCTCGAATTTCAGATGGATGCATTTTGCTTAAGAGAGCGGGATCTACTGAATCGCTTTGCTATGGAAGTGTCCCAACGACAAAAACAGGGAGAAAGCAAAGAGTACTCAGTCCTTCTGTTCCAGAGTTATCAGCCTGCAGAGGATTTGGGAAGAGCTTTCTCAGATCGATCAATATTGCAAACCTTCATCGATGTAGAGGCAACTGTACCTGTTGGTTCACTAAAGCTAAGAGTAACTGTTACTGACCTTGTGAAAATCTGTCTCTGCCACTTAACACTTGACATTATAGAGAAGAATGTCTTAGCTACGTTGAGGACCTTGTATGCATTGAGTTGCTTGGAAGAGGTTGTGGCATTCCTCCGCTACGGGTACTTATCAATAGATAATGTTGCTGCCATTAGGAAAGAAGTAAGCAGCCTCTACAGGGAGTTACGACCTCATGCACTTGCCTTGATGCCCGCCATAGAGGAAGTTTGTGAAGGACTGCTGTCCTCCATGCGATCATATGTCATGGGAAACCATCAGGATCATCACCTACCTCCAGAACAGTCAAATTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

233

Amino Acids

26.3

Weight (kDa)

6.32

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACOX	PF01756	49 - 201	6.9e-10	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	175
AciI	CCGC	3 cut(s)	175, 499, 597
AclWI	GGATC	3 cut(s)	79, 186, 672
AcsI	RAATTY	2 cut(s)	143, 691
AfaI	GTAC	3 cut(s)	242, 345, 509
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	65, 293, 364, 443
AluI	AGCT	4 cut(s)	65, 293, 364, 443
Alw26I	GTCTC	2 cut(s)	143, 404
AlwI	GGATC	3 cut(s)	79, 186, 672
ApeKI	GCWGC	2 cut(s)	530, 552
ApoI	RAATTY	2 cut(s)	143, 691
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	517, 564
BccI	CCATC	3 cut(s)	115, 145, 666
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	143, 404
BfmI	CTRYAG	2 cut(s)	273, 559
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	531, 553
BlsI	GCNGC	2 cut(s)	532, 554
BmcAI	AGTACT	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmsI	GCATC	2 cut(s)	145, 582
BoxI	GACNNNNGTC	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	663
Bsa29I	ATCGAT	2 cut(s)	304, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
BseCI	ATCGAT	2 cut(s)	304, 327
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	2 cut(s)	258, 312
BseXI	GCAGC	2 cut(s)	517, 564
BshVI	ATCGAT	2 cut(s)	304, 327
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	2 cut(s)	143, 404
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	491
Bsp143I	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
BspACI	CCGC	3 cut(s)	175, 499, 597
BspCNI	CTCAG	2 cut(s)	257, 311
BspDI	ATCGAT	2 cut(s)	304, 327
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	3 cut(s)	79, 186, 672
BspQI	GCTCTTC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	175
BssMI	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
Bst4CI	ACNGT	3 cut(s)	343, 376, 687
Bst6I	CTCTTC	3 cut(s)	38, 283, 474
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	273, 597
BstDEI	CTNAG	5 cut(s)	39, 244, 298, 365, 439
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	6 cut(s)	74, 181, 304, 308, 641, 667
BstMAI	GTCTC	2 cut(s)	143, 404
BstMBI	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	625
BstSFI	CTRYAG	2 cut(s)	273, 559
BstV1I	GCAGC	2 cut(s)	517, 564
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	304, 327
BsuTUI	ATCGAT	2 cut(s)	304, 327
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	273, 597
Cfr13I	GGNCC	1 cut(s)	453
ClaI	ATCGAT	2 cut(s)	304, 327
Csp6I	GTAC	3 cut(s)	241, 344, 508
CviAII	CATG	3 cut(s)	578, 634, 649
CviJI	RGCY	7 cut(s)	38, 65, 271, 293, 364, 443, 555
CviKI_1	RGCY	7 cut(s)	38, 65, 271, 293, 364, 443, 555
CviQI	GTAC	3 cut(s)	241, 344, 508
DdeI	CTNAG	5 cut(s)	39, 244, 298, 365, 439
DpnI	GATC	6 cut(s)	73, 180, 303, 307, 640, 666
DpnII	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
DraI	TTTAAA	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	38, 283, 474
EarI	CTCTTC	3 cut(s)	38, 283, 474
Eco47I	GGWCC	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	453
EcoT22I	ATGCAT	2 cut(s)	160, 466
FaeI	CATG	3 cut(s)	581, 637, 652
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	577, 633, 648
FauI	CCCGC	2 cut(s)	168, 604
FauNDI	CATATG	2 cut(s)	81, 643
Fnu4HI	GCNGC	2 cut(s)	531, 553
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	531, 553
GluI	GCNGC	2 cut(s)	531, 553
GsuI	CTGGAG	1 cut(s)	663
Hin1II	CATG	3 cut(s)	581, 637, 652
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	76, 150, 301
Hpy188III	TCNNGA	4 cut(s)	140, 259, 662, 680
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	260, 331, 611
HpyCH4III	ACNGT	3 cut(s)	343, 376, 687
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	23, 158, 275, 316, 464, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	5 cut(s)	39, 244, 298, 365, 439
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	3 cut(s)	581, 637, 652
Kzo9I	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	209, 272, 285, 360, 547, 647, 693
Lsp1109I	GCAGC	2 cut(s)	517, 564
LweI	GCATC	2 cut(s)	145, 582
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	370, 376, 567
MalI	GATC	6 cut(s)	73, 180, 303, 307, 640, 666
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
MboII	GAAGA	4 cut(s)	55, 300, 442, 491
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	2 cut(s)	143, 691
Mph1103I	ATGCAT	2 cut(s)	160, 466
MseI	TTAA	3 cut(s)	60, 167, 410
MspCI	CTTAAG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	2 cut(s)	81, 643
NdeII	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
NlaIII	CATG	3 cut(s)	581, 637, 652
NsiI	ATGCAT	2 cut(s)	160, 466
PciSI	GCTCTTC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	532, 554
PpuMI	RGGWCCY	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	453
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	242, 345, 509
RsaNI	GTAC	3 cut(s)	241, 344, 508
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	60, 167, 410
SatI	GCNGC	2 cut(s)	531, 553
Sau3AI	GATC	6 cut(s)	71, 178, 301, 305, 638, 664
Sau96I	GGNCC	1 cut(s)	453
ScaI	AGTACT	1 cut(s)	242
SfaNI	GCATC	2 cut(s)	145, 582
SfcI	CTRYAG	2 cut(s)	273, 559
SinI	GGWCC	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	143, 691
SsiI	CCGC	3 cut(s)	175, 499, 597
SspI	AATATT	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	343, 376, 687
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	141, 304, 327
TasI	AATT	2 cut(s)	143, 691
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	3 cut(s)	60, 167, 410
Tru9I	TTAA	3 cut(s)	60, 167, 410
TseI	GCWGC	2 cut(s)	530, 552
TspDTI	ATGAA	2 cut(s)	98, 313
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	2 cut(s)	143, 691
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	2 cut(s)	160, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.