Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004873

Physical Location & Seq

Genomic Coordinates Reverse (-)

20991653 .. 20993278

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G009330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTCAACAAGGCACTTCTTGTAGAGTTTATAACGGCTCAGAAGAGAAGCAAACCATTTAAAGATTTGGGATCAGAATATATGAATAAACCTTGCCCCATCATTCCATCTAACCTTACAAGTTCTGCTCTCCAAAGTCTCGAATTTCAGATGGATGCATTTTGCTTAAGAGAGCAAGATCTACTGAATCGCTTTGCTATGGAAGTGTCCCAACGACAAAAACTGGGAGAAAGCAAAGAGTACTCGGTCTTTCTGTTCCATAGTTATCAGCCTGCAGAGGATTTGGGAAGAGCTTTCTCAGATCGATCAATATTGCAAACCTTCATCGATGTAGAGGCAACTGTACCTGTTGGTTCACTAAAGCTAAGAGTAACTGTTACTGACCTTGTGAAAATCTGTCTCTGCACGTACTTGTATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

140

Amino Acids

15.91

Weight (kDa)

6.57

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004873)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g22180
rosa_chinensis	RchiOBHm_Chr1g0321941 RchiOBHm_Chr1g0336421 RchiOBHm_Chr1g0336431 RchiOBHm_Chr2g0152681 RchiOBHm_Chr6g0266281 RchiOBHm_Chr6g0291341 RchiOBHm_Chr7g0206361 RchiOBHm_Chr7g0226181 RchiOBHm_Chr7g0227301
rosa_laevigata	RLG00000029446
rosa_roxburghii	Rroxscaffold_4G00309910 Rroxscaffold_5G00337020
rosa_rugosa	Rorug03G0291300 Rorug05G0042900
rosa_samantha	Rh2DG366500 Rh4CG031800 Rh4DG156100 Rh5AG465100 Rh5BG454800 Rh5BG454900 Rh5CG477100 Rh5DG469300 Rh6AG188300 Rh6CG344100 Rh7DG235800 Rh7DG398700
rosa_wichuraiana	Rw4G002250 Rw4G009330 Rw4G009480 Rw7G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	3 cut(s)	242, 345, 410
AflII	CTTAAG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	293, 364
AluI	AGCT	2 cut(s)	293, 364
Alw26I	GTCTC	2 cut(s)	143, 404
AlwI	GGATC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	143
BccI	CCATC	3 cut(s)	107, 115, 145
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	143, 404
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	166
BglII	AGATCT	1 cut(s)	178
BmcAI	AGTACT	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	233
Bsa29I	ATCGAT	2 cut(s)	304, 327
BsaAI	YACGTR	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	228
BseCI	ATCGAT	2 cut(s)	304, 327
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	53, 312
BseNI	ACTGG	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	388
BshVI	ATCGAT	2 cut(s)	304, 327
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	143, 404
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	4 cut(s)	71, 178, 301, 305
BspCNI	CTCAG	2 cut(s)	52, 311
BspDI	ATCGAT	2 cut(s)	304, 327
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	71, 178, 301, 305
Bst4CI	ACNGT	2 cut(s)	343, 376
Bst6I	CTCTTC	2 cut(s)	38, 283
BstAFI	CTTAAG	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	39, 298, 365
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	4 cut(s)	74, 181, 304, 308
BstMAI	GTCTC	2 cut(s)	143, 404
BstMBI	GATC	4 cut(s)	71, 178, 301, 305
BstSFI	CTRYAG	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	304, 327
BsuTUI	ATCGAT	2 cut(s)	304, 327
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	273
ClaI	ATCGAT	2 cut(s)	304, 327
Csp6I	GTAC	3 cut(s)	241, 344, 409
CviJI	RGCY	4 cut(s)	38, 271, 293, 364
CviKI_1	RGCY	4 cut(s)	38, 271, 293, 364
CviQI	GTAC	3 cut(s)	241, 344, 409
DdeI	CTNAG	3 cut(s)	39, 298, 365
DpnI	GATC	4 cut(s)	73, 180, 303, 307
DpnII	GATC	4 cut(s)	71, 178, 301, 305
DraI	TTTAAA	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	38, 283
EarI	CTCTTC	2 cut(s)	38, 283
EcoT22I	ATGCAT	1 cut(s)	160
FaiI	YATR	6 cut(s)	32, 81, 83, 200, 261, 417
FaqI	GGGAC	1 cut(s)	193
FokI	GGATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	7, 356
Hpy188I	TCNGA	4 cut(s)	42, 76, 150, 301
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	7, 356
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	343, 376
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	158, 275, 316, 405
HpyF3I	CTNAG	3 cut(s)	39, 298, 365
HpySE526I	ACGT	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	71, 178, 301, 305
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	209, 285, 360
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	370, 376
MalI	GATC	4 cut(s)	73, 180, 303, 307
MboI	GATC	4 cut(s)	71, 178, 301, 305
MboII	GAAGA	2 cut(s)	55, 300
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	2 cut(s)	271, 328
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	2 cut(s)	60, 167
MspCI	CTTAAG	1 cut(s)	166
NdeII	GATC	4 cut(s)	71, 178, 301, 305
NsiI	ATGCAT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	242, 345, 410
RsaNI	GTAC	3 cut(s)	241, 344, 409
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	60, 167
Sau3AI	GATC	4 cut(s)	71, 178, 301, 305
ScaI	AGTACT	1 cut(s)	242
SetI	ASST	8 cut(s)	94, 117, 295, 323, 349, 366, 387, 410
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	1 cut(s)	143
SspI	AATATT	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	343, 376
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	141, 304, 327
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	60, 167
Tru9I	TTAA	2 cut(s)	60, 167
TspDTI	ATGAA	2 cut(s)	98, 313
Vha464I	CTTAAG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.