Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

55721844 .. 55725225

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACGAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAAAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAACTTCTTCTGTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

288

Amino Acids

32.25

Weight (kDa)

5.29

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	24 - 137	5.9e-20	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	2 cut(s)	101, 499
AgsI	TTSAA	3 cut(s)	611, 689, 804
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	5 cut(s)	8, 115, 333, 714, 843
AluBI	AGCT	2 cut(s)	541, 799
AluI	AGCT	2 cut(s)	541, 799
Alw21I	GWGCWC	3 cut(s)	364, 619, 651
Alw26I	GTCTC	5 cut(s)	115, 302, 397, 431, 551
Alw44I	GTGCAC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	5 cut(s)	192, 658, 661, 733, 763
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	3 cut(s)	364, 619, 651
BbvI	GCAGC	5 cut(s)	204, 670, 673, 720, 775
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	5 cut(s)	10, 117, 335, 716, 845
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	5 cut(s)	115, 302, 397, 431, 551
BfmI	CTRYAG	2 cut(s)	65, 516
BisI	GCNGC	5 cut(s)	193, 659, 662, 734, 764
BlsI	GCNGC	5 cut(s)	194, 660, 663, 735, 765
Bme1390I	CCNGG	5 cut(s)	10, 117, 335, 716, 845
Bme18I	GGWCC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	5 cut(s)	10, 117, 335, 716, 845
BmsI	GCATC	5 cut(s)	12, 419, 448, 592, 677
BpiI	GAAGAC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	635
BsaJI	CCNNGG	3 cut(s)	107, 116, 333
BsaWI	WCCGGW	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	5 cut(s)	10, 117, 335, 716, 845
BseDI	CCNNGG	3 cut(s)	107, 116, 333
BseGI	GGATG	2 cut(s)	328, 867
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	767
BseRI	GAGGAG	2 cut(s)	147, 495
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	5 cut(s)	204, 670, 673, 720, 775
BshFI	GGCC	1 cut(s)	133
BsiHKAI	GWGCWC	3 cut(s)	364, 619, 651
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	126
BsmAI	GTCTC	5 cut(s)	115, 302, 397, 431, 551
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	364, 619, 651
Bsp143I	GATC	2 cut(s)	45, 622
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	107, 116, 333
BssMI	GATC	2 cut(s)	45, 622
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	5 cut(s)	10, 117, 335, 716, 845
Bst4CI	ACNGT	3 cut(s)	391, 452, 694
Bst6I	CTCTTC	1 cut(s)	782
BstAPI	GCANNNNNTGC	2 cut(s)	146, 416
BstC8I	GCNNGC	4 cut(s)	142, 190, 364, 666
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	328, 867
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	2 cut(s)	48, 625
BstMAI	GTCTC	5 cut(s)	115, 302, 397, 431, 551
BstMBI	GATC	2 cut(s)	45, 622
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 40, 146, 416, 547, 655
BstNI	CCWGG	5 cut(s)	10, 117, 335, 716, 845
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	5 cut(s)	8, 115, 333, 714, 843
BstSFI	CTRYAG	2 cut(s)	65, 516
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	5 cut(s)	204, 670, 673, 720, 775
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	328, 867
BtsI	GCAGTG	2 cut(s)	151, 202
BtsIMutI	CAGTG	4 cut(s)	151, 202, 699, 782
Cac8I	GCNNGC	4 cut(s)	142, 190, 364, 666
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	100, 498
CviAII	CATG	3 cut(s)	141, 185, 421
CviQI	GTAC	2 cut(s)	100, 498
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	2 cut(s)	47, 624
DpnII	GATC	2 cut(s)	45, 622
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	5 cut(s)	8, 115, 333, 714, 843
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	3 cut(s)	144, 188, 424
FalI	AAGNNNNNCTT	4 cut(s)	603, 635, 623, 655
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	3 cut(s)	140, 184, 420
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	193, 659, 662, 734, 764
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	5 cut(s)	193, 659, 662, 734, 764
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	5 cut(s)	193, 659, 662, 734, 764
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	477
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	144, 188, 424
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	4 cut(s)	154, 290, 439, 559
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	3 cut(s)	362, 387, 683
Hpy188I	TCNGA	3 cut(s)	237, 289, 474
Hpy188III	TCNNGA	2 cut(s)	401, 620
Hpy8I	GTNNAC	3 cut(s)	362, 387, 683
HpyAV	CCTTC	2 cut(s)	73, 752
HpyCH4III	ACNGT	3 cut(s)	391, 452, 694
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	140, 144, 149, 362, 445, 763
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 40, 146, 416, 547, 655
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	144, 188, 424
HspAI	GCGC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	45, 622
LmnI	GCTCC	3 cut(s)	238, 482, 655
Lsp1109I	GCAGC	5 cut(s)	204, 670, 673, 720, 775
LweI	GCATC	5 cut(s)	12, 419, 448, 592, 677
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	197, 262, 505
MalI	GATC	2 cut(s)	47, 624
MboI	GATC	2 cut(s)	45, 622
MboII	GAAGA	6 cut(s)	366, 459, 467, 617, 799, 845
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	3 cut(s)	364, 619, 651
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	5 cut(s)	94, 135, 225, 510, 827
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	148, 433, 553
MmeI	TCCRAC	2 cut(s)	35, 290
MnlI	CCTC	5 cut(s)	119, 168, 473, 481, 748
Mox20I	TGGCCA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	3 cut(s)	356, 641, 705
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	5 cut(s)	10, 117, 335, 716, 845
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	5 cut(s)	10, 117, 335, 716, 845
MwoI	GCNNNNNNNGC	6 cut(s)	31, 40, 146, 416, 547, 655
NdeII	GATC	2 cut(s)	45, 622
NlaIII	CATG	3 cut(s)	144, 188, 424
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	197, 262
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	5 cut(s)	194, 660, 663, 735, 765
PleI	GAGTC	3 cut(s)	148, 433, 553
PpsI	GAGTC	3 cut(s)	148, 433, 553
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	5 cut(s)	8, 115, 333, 714, 843
PspGI	CCWGG	5 cut(s)	8, 115, 333, 714, 843
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
RsaI	GTAC	2 cut(s)	101, 499
RsaNI	GTAC	2 cut(s)	100, 498
SaqAI	TTAA	3 cut(s)	356, 641, 705
SatI	GCNGC	5 cut(s)	193, 659, 662, 734, 764
Sau3AI	GATC	2 cut(s)	45, 622
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	3 cut(s)	148, 433, 553
ScrFI	CCNGG	5 cut(s)	10, 117, 335, 716, 845
SduI	GDGCHC	3 cut(s)	364, 619, 651
SfaNI	GCATC	5 cut(s)	12, 419, 448, 592, 677
SfcI	CTRYAG	2 cut(s)	65, 516
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	5 cut(s)	94, 135, 225, 510, 827
StyD4I	CCNGG	5 cut(s)	8, 115, 333, 714, 843
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	3 cut(s)	391, 452, 694
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	171
TasI	AATT	5 cut(s)	94, 135, 225, 510, 827
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	356, 641, 705
Tru9I	TTAA	3 cut(s)	356, 641, 705
TscAI	CASTG	4 cut(s)	151, 202, 699, 789
TseFI	GTSAC	2 cut(s)	197, 262
TseI	GCWGC	5 cut(s)	192, 658, 661, 733, 763
Tsp45I	GTSAC	2 cut(s)	197, 262
TspDTI	ATGAA	2 cut(s)	611, 665
TspRI	CASTG	4 cut(s)	151, 202, 699, 789
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.