Rh7CG121100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004554
Physical Location & Seq
Reverse (-)
9303859 .. 9313652
9794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG121100.1

Sequence Viewer

Length: 666 bp
ATGGTCGGTTCTTCAGTACGTTTGAAGTCCTTAGTGGTCAGAGATTGCTGGAACCTCGAGATTATTGAGATCTGTGATCTACCTCAGCTTGCTTTCTTTCGGTATGAGGGAACACCTATATGCCTGGACCTGAATAGAGTTCGAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCCTTAAACTTGCGTTAAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACGCTAGATAACACACTTACTTTTCTGCCAGAAGAGAATGTTGTCTTTCCTATTCCTCAGTTAGCAGAGCTTGAGTACTTGGAGTTGCGAATCGAAGCCGATGATGCATGTGTTCTGTTGCAGTTGGCGTATTTTTTGGATGCATCTCCTTGCTTGCAAAAGTTATTGATAAAGTTACAGTGGTATCGAATTTCAGTTTTCTGCTGTTTGAGCAACATTCAGTTATCGTGTGTGAGAGTTGTTAATGGTACTGTGGTCATCGTTACTGTGTTGCCATGGTGTGAGCTCCGAAGAGGAAGGAAACCCGATGAATTTATTAGTAAGGAACAAGAAGGAAGGCGGCACGCAATGGCCCTTAGTAGAAGTATGCCAAAATGGCTAGATTTTGTATGCCAGGAGGCAGGGACACAGGGGAAACTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

221

Amino Acids

25.31

Weight (kDa)

5.61

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 7 - 142 5.4e-11 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 580
AcsI RAATTY 3 cut(s) 182, 429, 551
AfaI GTAC 3 cut(s) 18, 317, 490
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 3 cut(s) 123, 177, 633
AluBI AGCT 5 cut(s) 88, 208, 229, 310, 526
AluI AGCT 5 cut(s) 88, 208, 229, 310, 526
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 3 cut(s) 182, 429, 551
AspS9I GGNCC 2 cut(s) 127, 592
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 127
BaeI ACNNNNGTAYC 4 cut(s) 407, 440, 480, 513
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 3 cut(s) 125, 179, 635
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 149, 245, 620
BglI GCCNNNNNGGC 1 cut(s) 616
BglII AGATCT 1 cut(s) 69
BisI GCNGC 2 cut(s) 206, 581
BlsI GCNGC 2 cut(s) 207, 582
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 125, 179, 635
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 127, 592
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 3 cut(s) 125, 179, 635
BmsI GCATC 3 cut(s) 334, 370, 392
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 163, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 3 cut(s) 125, 179, 635
BseDI CCNNGG 2 cut(s) 163, 515
BseGI GGATG 2 cut(s) 178, 385
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 98, 311
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 145, 658
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 145, 658
BsnI GGCC 1 cut(s) 593
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 2 cut(s) 69, 76
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 1 cut(s) 580
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 2 cut(s) 97, 310
BspLI GGNNCC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 163, 515
BssMI GATC 2 cut(s) 69, 76
BssT1I CCWWGG 2 cut(s) 163, 515
Bst2UI CCWGG 3 cut(s) 125, 179, 635
Bst4CI ACNGT 3 cut(s) 420, 493, 508
Bst6I CTCTTC 2 cut(s) 267, 526
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 5 cut(s) 90, 210, 214, 395, 585
BstDEI CTNAG 5 cut(s) 31, 84, 230, 297, 596
BstDSI CCRYGG 1 cut(s) 515
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 178, 385
BstKTI GATC 2 cut(s) 72, 79
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 69, 76
BstMWI GCNNNNNNNGC 3 cut(s) 344, 450, 616
BstNI CCWGG 3 cut(s) 125, 179, 635
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 123, 177, 633
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 178, 385
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 5 cut(s) 90, 210, 214, 395, 585
Cfr13I GGNCC 2 cut(s) 127, 592
Csp6I GTAC 3 cut(s) 17, 316, 489
CviAII CATG 2 cut(s) 348, 516
CviJI RGCY 8 cut(s) 88, 208, 229, 310, 338, 526, 593, 619
CviKI_1 RGCY 8 cut(s) 88, 208, 229, 310, 338, 526, 593, 619
CviQI GTAC 3 cut(s) 17, 316, 489
DdeI CTNAG 5 cut(s) 31, 84, 230, 297, 596
DpnI GATC 2 cut(s) 71, 78
DpnII GATC 2 cut(s) 69, 76
Eam1104I CTCTTC 2 cut(s) 267, 526
EarI CTCTTC 2 cut(s) 267, 526
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 163, 515
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 123, 177, 633
EcoT14I CCWWGG 2 cut(s) 163, 515
EcoT22I ATGCAT 2 cut(s) 349, 385
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 163, 515
FaeI CATG 2 cut(s) 351, 519
FaiI YATR 8 cut(s) 105, 119, 121, 349, 517, 608, 631, 664
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 2 cut(s) 145, 658
FatI CATG 2 cut(s) 347, 515
Fnu4HI GCNGC 2 cut(s) 206, 581
FokI GGATG 2 cut(s) 185, 392
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 2 cut(s) 206, 581
FspBI CTAG 3 cut(s) 149, 245, 620
GluI GCNGC 2 cut(s) 206, 581
HaeIII GGCC 1 cut(s) 593
Hin1II CATG 2 cut(s) 351, 519
HinfI GANTC 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 41, 530
Hpy188III TCNNGA 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 531, 566, 570
HpyCH4III ACNGT 3 cut(s) 420, 493, 508
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 347, 361, 383, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 450, 616
HpyF3I CTNAG 5 cut(s) 31, 84, 230, 297, 596
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 351, 519
Kzo9I GATC 2 cut(s) 69, 76
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 334, 370, 392
MaeI CTAG 3 cut(s) 149, 245, 620
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 414, 502
MalI GATC 2 cut(s) 71, 78
MboI GATC 2 cut(s) 69, 76
MboII GAAGA 3 cut(s) 3, 284, 543
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 3 cut(s) 182, 429, 551
MnlI CCTC 7 cut(s) 65, 93, 100, 163, 306, 527, 631
Mph1103I ATGCAT 2 cut(s) 349, 385
MseI TTAA 3 cut(s) 189, 200, 483
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 3 cut(s) 125, 179, 635
MvaI CCWGG 3 cut(s) 125, 179, 635
MwoI GCNNNNNNNGC 3 cut(s) 344, 450, 616
NcoI CCATGG 1 cut(s) 515
NdeII GATC 2 cut(s) 69, 76
NlaIII CATG 2 cut(s) 351, 519
NlaIV GGNNCC 1 cut(s) 53
NsiI ATGCAT 2 cut(s) 349, 385
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 207, 582
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 123, 177, 633
PspGI CCWGG 3 cut(s) 123, 177, 633
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 127, 592
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 18, 317, 490
RsaNI GTAC 3 cut(s) 17, 316, 489
RseI CAYNNNNRTG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 189, 200, 483
SatI GCNGC 2 cut(s) 206, 581
Sau3AI GATC 2 cut(s) 69, 76
Sau96I GGNCC 2 cut(s) 127, 592
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 125, 179, 635
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 3 cut(s) 334, 370, 392
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 56, 311
SmoI CTYRAG 2 cut(s) 56, 311
Sse9I AATT 3 cut(s) 182, 429, 551
SsiI CCGC 1 cut(s) 580
SspMI CTAG 3 cut(s) 149, 245, 620
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 123, 177, 633
StyI CCWWGG 2 cut(s) 163, 515
TaaI ACNGT 3 cut(s) 420, 493, 508
TaiI ACGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 57, 142, 333, 427
TasI AATT 3 cut(s) 182, 429, 551
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 3 cut(s) 189, 200, 483
Tru9I TTAA 3 cut(s) 189, 200, 483
TscAI CASTG 1 cut(s) 425
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 3 cut(s) 182, 429, 551
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 3 cut(s) 149, 245, 620
ZrmI AGTACT 1 cut(s) 317
Zsp2I ATGCAT 2 cut(s) 349, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.