Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

62348700 .. 62348996

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0508800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAAGTCATGAAACTTTACCTATTCCCTGACGCTGAGGCAGCGGGGACAACGGCGGAGGCAGCGGGGACATCGGCGGAGGCAGCGGAGACAACGGCCGAGGCAGCCGGGACATTGGCGGAGGCGGCGGGGACAATGGTGGAGGGGGAGACATCGGCGGAGGCAGCCGGGACATCGGCGGAGGCGGCGGGGACAATGGTGGAGGGGGAGACATCGGCGGAGACGTGGGAGCTGGCGGAGGCGGGGGGGGACCTGAGCTTGACCGTCCATGGAGGGAGGGTGAGGGGATCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

98

Amino Acids

9.58

Weight (kDa)

4.05

Isoelectric Point (pI)

1.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	96
AjiI	CACGTC	1 cut(s)	225
AluBI	AGCT	2 cut(s)	232, 258
AluI	AGCT	2 cut(s)	232, 258
Alw26I	GTCTC	4 cut(s)	83, 143, 203, 215
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	5 cut(s)	41, 62, 83, 104, 164
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	109, 169
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	53, 74, 95, 116, 176
BceAI	ACGGC	2 cut(s)	69, 111
BcnI	CCSGG	2 cut(s)	109, 169
BcoDI	GTCTC	4 cut(s)	83, 143, 203, 215
BisI	GCNGC	7 cut(s)	42, 63, 84, 105, 126, 165, 186
BlsI	GCNGC	7 cut(s)	43, 64, 85, 106, 127, 166, 187
Bme1390I	CCNGG	2 cut(s)	109, 169
Bme18I	GGWCC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	109, 169
Bpu10I	CCTNAGC	2 cut(s)	36, 254
BpuMI	CCSGG	2 cut(s)	109, 169
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	99, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	99, 268
BseMII	CTCAG	2 cut(s)	27, 245
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	53, 74, 95, 116, 176
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	108, 168
BslFI	GGGAC	7 cut(s)	61, 82, 124, 145, 184, 205, 263
BsmAI	GTCTC	4 cut(s)	83, 143, 203, 215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	7 cut(s)	61, 82, 124, 145, 184, 205, 263
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	268
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	28, 246
BspDI	ATCGAT	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	99, 268
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	36, 254
BstDSI	CCRYGG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	4 cut(s)	83, 143, 203, 215
BstMBI	GATC	1 cut(s)	287
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 62, 83, 104, 125, 164, 185
BstSCI	CCNGG	2 cut(s)	107, 167
BstV1I	GCAGC	5 cut(s)	53, 74, 95, 116, 176
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	268
BtrI	CACGTC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	290
CseI	GACGC	1 cut(s)	41
CviAII	CATG	2 cut(s)	10, 269
CviJI	RGCY	5 cut(s)	98, 107, 167, 232, 258
CviKI_1	RGCY	5 cut(s)	98, 107, 167, 232, 258
DdeI	CTNAG	2 cut(s)	36, 254
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EciI	GGCGGA	7 cut(s)	71, 92, 134, 173, 194, 233, 251
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	250
Eco52I	CGGCCG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	13, 272
FaiI	YATR	2 cut(s)	11, 270
FaqI	GGGAC	7 cut(s)	61, 82, 124, 145, 184, 205, 263
FatI	CATG	2 cut(s)	9, 268
FauI	CCCGC	5 cut(s)	37, 58, 121, 181, 235
Fnu4HI	GCNGC	7 cut(s)	42, 63, 84, 105, 126, 165, 186
Fsp4HI	GCNGC	7 cut(s)	42, 63, 84, 105, 126, 165, 186
GluI	GCNGC	7 cut(s)	42, 63, 84, 105, 126, 165, 186
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	108, 168
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	13, 272
HpaII	CCGG	2 cut(s)	108, 168
HphI	GGTGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 62, 83, 104, 125, 164, 185
HpyF3I	CTNAG	2 cut(s)	36, 254
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	13, 272
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	5 cut(s)	42, 121, 181, 218, 266
Lsp1109I	GCAGC	5 cut(s)	53, 74, 95, 116, 176
MaeII	ACGT	1 cut(s)	224
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	44, 65, 86
MspI	CCGG	2 cut(s)	108, 168
MspR9I	CCNGG	2 cut(s)	109, 169
MwoI	GCNNNNNNNGC	7 cut(s)	41, 62, 83, 104, 125, 164, 185
NciI	CCSGG	2 cut(s)	109, 169
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	13, 272
NlaIV	GGNNCC	1 cut(s)	251
NmeAIII	GCCGAG	1 cut(s)	124
PagI	TCATGA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PkrI	GCNGC	7 cut(s)	43, 64, 85, 106, 127, 166, 187
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
SatI	GCNGC	7 cut(s)	42, 63, 84, 105, 126, 165, 186
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	109, 169
SetI	ASST	5 cut(s)	24, 227, 234, 255, 260
SinI	GGWCC	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	107, 167
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	290
TauI	GCSGC	2 cut(s)	128, 188
TseI	GCWGC	5 cut(s)	41, 62, 83, 104, 164
TspDTI	ATGAA	2 cut(s)	17, 26
VpaK11BI	GGWCC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.