Rh7AG116200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004554
Physical Location & Seq
Reverse (-)
9050731 .. 9053371
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG116200.1

Sequence Viewer

Length: 600 bp
ATGGTCGGTTCGTCAGTACGTTTGAAGTCCTTAGTGGTCAGAGATTGCTGGAACCTCGAGATTATTGAGATCTGTGATCTACCTCAGCTTGCTTTCTTTCAGTATGACGGAACACCTATATGCCTGGACCTGAATAGAGTTCGAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCCTTAAACTTGCCTTAAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTGCGCTAGATAACACACTTAGTTTTCTGCCAGAAGAGAATGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGAGTACTTGGAGTTGCGAATCGCAGCCGATGATGCATGTGTTCTATTGCAGTTGGCGTCTTTTTTGGATGCATCTCCTCGCTTGCAAAAGTTATTGATAAAGGTGGTCATCGTTACTGTGTTGCCATGGTGTGAGCTCCGAAGAGGAAGGAAACCTGATGAATTTATTAGTAAGGAACAAGAAGGAAGGCGGCACGCGATGGCCCTTAGTAGAAGTATGCCAAAATCGCTAGATTTTGTATGCCGCCAGGCAGGGATGGGGGAAACTATTATGAGAGAAGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

199

Amino Acids

22.63

Weight (kDa)

5.36

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 7 - 139 1.2e-10 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 509
AciI CCGC 2 cut(s) 502, 556
AcsI RAATTY 2 cut(s) 182, 473
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 2 cut(s) 18, 317
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 3 cut(s) 123, 177, 558
AluBI AGCT 5 cut(s) 88, 208, 229, 310, 448
AluI AGCT 5 cut(s) 88, 208, 229, 310, 448
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 205, 335
ApoI RAATTY 2 cut(s) 182, 473
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 127, 514
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 217, 347
BccI CCATC 2 cut(s) 505, 562
BciT130I CCWGG 3 cut(s) 125, 179, 560
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 149, 245, 542
BglII AGATCT 1 cut(s) 69
BisI GCNGC 4 cut(s) 206, 336, 503, 556
BlsI GCNGC 4 cut(s) 207, 337, 504, 557
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 125, 179, 560
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 127, 514
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 3 cut(s) 125, 179, 560
BmsI GCATC 3 cut(s) 334, 370, 392
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 163, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 3 cut(s) 125, 179, 560
BseDI CCNNGG 2 cut(s) 163, 437
BseGI GGATG 3 cut(s) 178, 385, 573
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 98, 311
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 217, 347
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 2 cut(s) 69, 76
Bsp19I CCATGG 1 cut(s) 437
BspACI CCGC 2 cut(s) 502, 556
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 97, 310
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 163, 437
BssMI GATC 2 cut(s) 69, 76
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 2 cut(s) 163, 437
Bst2UI CCWGG 3 cut(s) 125, 179, 560
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 2 cut(s) 267, 448
BstACI GRCGYC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 5 cut(s) 90, 210, 214, 395, 507
BstDEI CTNAG 6 cut(s) 31, 84, 230, 257, 297, 518
BstDSI CCRYGG 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 178, 385, 573
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 72, 79
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 69, 76
BstMWI GCNNNNNNNGC 2 cut(s) 344, 538
BstNI CCWGG 3 cut(s) 125, 179, 560
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 123, 177, 558
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 217, 347
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 178, 385, 573
Cac8I GCNNGC 5 cut(s) 90, 210, 214, 395, 507
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 127, 514
CseI GACGC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 17, 316
CviAII CATG 2 cut(s) 348, 438
CviJI RGCY 7 cut(s) 88, 208, 229, 310, 338, 448, 515
CviKI_1 RGCY 7 cut(s) 88, 208, 229, 310, 338, 448, 515
CviQI GTAC 2 cut(s) 17, 316
DdeI CTNAG 6 cut(s) 31, 84, 230, 257, 297, 518
DpnI GATC 2 cut(s) 71, 78
DpnII GATC 2 cut(s) 69, 76
Eam1104I CTCTTC 2 cut(s) 267, 448
EarI CTCTTC 2 cut(s) 267, 448
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 163, 437
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 123, 177, 558
EcoT14I CCWWGG 2 cut(s) 163, 437
EcoT22I ATGCAT 2 cut(s) 349, 385
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 163, 437
FaeI CATG 2 cut(s) 351, 441
FaiI YATR 8 cut(s) 105, 119, 121, 349, 439, 530, 553, 584
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 347, 437
Fnu4HI GCNGC 4 cut(s) 206, 336, 503, 556
FokI GGATG 3 cut(s) 185, 392, 580
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 4 cut(s) 206, 336, 503, 556
FspBI CTAG 3 cut(s) 149, 245, 542
GlaI GCGC 1 cut(s) 243
GluI GCNGC 4 cut(s) 206, 336, 503, 556
HaeIII GGCC 1 cut(s) 515
HgaI GACGC 1 cut(s) 357
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 2 cut(s) 351, 441
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 41, 452
Hpy188III TCNNGA 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 453, 488, 492
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 347, 361, 383, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 538
HpyF3I CTNAG 6 cut(s) 31, 84, 230, 257, 297, 518
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 2 cut(s) 351, 441
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 69, 76
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 2 cut(s) 217, 347
LweI GCATC 3 cut(s) 334, 370, 392
MaeI CTAG 3 cut(s) 149, 245, 542
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 300, 424
MalI GATC 2 cut(s) 71, 78
MboI GATC 2 cut(s) 69, 76
MboII GAAGA 2 cut(s) 284, 465
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 182, 473
MnlI CCTC 6 cut(s) 65, 93, 163, 306, 399, 449
Mph1103I ATGCAT 2 cut(s) 349, 385
MseI TTAA 2 cut(s) 189, 200
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 3 cut(s) 125, 179, 560
MvaI CCWGG 3 cut(s) 125, 179, 560
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 344, 538
NcoI CCATGG 1 cut(s) 437
NdeII GATC 2 cut(s) 69, 76
NlaIII CATG 2 cut(s) 351, 441
NlaIV GGNNCC 1 cut(s) 53
NsiI ATGCAT 2 cut(s) 349, 385
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 4 cut(s) 207, 337, 504, 557
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 3 cut(s) 123, 177, 558
PspGI CCWGG 3 cut(s) 123, 177, 558
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 127, 514
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 2 cut(s) 18, 317
RsaNI GTAC 2 cut(s) 17, 316
RseI CAYNNNNRTG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 189, 200
SatI GCNGC 4 cut(s) 206, 336, 503, 556
Sau3AI GATC 2 cut(s) 69, 76
Sau96I GGNCC 2 cut(s) 127, 514
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 125, 179, 560
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 3 cut(s) 334, 370, 392
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 56, 311
SmoI CTYRAG 2 cut(s) 56, 311
Sse9I AATT 2 cut(s) 182, 473
SsiI CCGC 2 cut(s) 502, 556
SspMI CTAG 3 cut(s) 149, 245, 542
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 123, 177, 558
StyI CCWWGG 2 cut(s) 163, 437
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 57, 142
TasI AATT 2 cut(s) 182, 473
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 505, 558
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 2 cut(s) 189, 200
Tru9I TTAA 2 cut(s) 189, 200
TseI GCWGC 2 cut(s) 205, 335
TspDTI ATGAA 1 cut(s) 486
TspGWI ACGGA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 2 cut(s) 182, 473
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 3 cut(s) 149, 245, 542
ZrmI AGTACT 1 cut(s) 317
Zsp2I ATGCAT 2 cut(s) 349, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.