Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

9348876 .. 9354543

Gene Structure 5668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGCTTGAAGAAGATTCGTCAAGTTCAACTACTCATCGCTGCCACAAAATCATTGATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCTCGTGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAAAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTTCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCTGCACATCTAATGTCGGAAAGGAAATAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATACTTGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACCACACAGGCCCCTCTGCCAACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGCTGGGTCAGAGATGTTCTAAAGAAGTACAGAGGGACGAAGCTTGATAAGTTCCATATCTTCTTCGATTTGGACAGCAGCTATACAAGCGAAATTGATGATTGGGTAGAGTTTGCTCTCGAACGCGATGTTAAAGCGTTGATCTTGGAAATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCCTTTACTAAGCGGATTACGGGCGAGTCCCTCCAAGTATTGGTGCTTGAAAATGTTGATCTGAATGGAGAGGTTTTTCAGCATATATCTCATTTTCGAGGACTTGAACAACTATCAGTGACTCATGCATCTGGTTTAAATCGCATCAGAATGTTTGGTTCTTCTGTACGTTTGAAGTCCTTAGTGGTCAGAAATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATATGCCTGGACCTGAACTCAGTTCCAAATCTAGTGAAAGTGTCCCTTGGCGAGTATGACCTGGAATTCTTAAAAGTAGCCTTCAAGCAGCTTGCATGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTGGTTTTCTGGTTAGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

657

Amino Acids

73.79

Weight (kDa)

5.2

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	13 - 207	4.8e-37	tRNA synthetases class I (C) catalytic domain
LRR_At1g61320_AtMIF1	PF23622	524 - 648	4.6e-07	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1250
Acc36I	ACCTGC	1 cut(s)	1250
AccB7I	CCANNNNNTGG	1 cut(s)	1585
AccII	CGCG	1 cut(s)	1485
AciI	CCGC	2 cut(s)	1223, 1558
AclWI	GGATC	1 cut(s)	1520
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	4 cut(s)	231, 435, 1258, 1877
AcuI	CTGAAG	2 cut(s)	1016, 1352
AfaI	GTAC	6 cut(s)	311, 709, 1078, 1152, 1388, 1713
AfiI	CCNNNNNNNGG	2 cut(s)	84, 1585
AgsI	TTSAA	9 cut(s)	8, 27, 821, 899, 1014, 1595, 1652, 1720, 1897
AjiI	CACGTC	1 cut(s)	582
AjnI	CCWGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
AjuI	GAANNNNNNNTTGG	4 cut(s)	57, 89, 1341, 1373
Alw21I	GWGCWC	4 cut(s)	229, 574, 829, 861
Alw26I	GTCTC	6 cut(s)	325, 512, 607, 641, 761, 1919
Alw44I	GTGCAC	2 cut(s)	225, 570
AlwI	GGATC	1 cut(s)	1520
AoxI	GGCC	3 cut(s)	86, 341, 1303
ApaLI	GTGCAC	2 cut(s)	225, 570
ApeKI	GCWGC	8 cut(s)	39, 402, 868, 871, 973, 1122, 1437, 1900
ApoI	RAATTY	4 cut(s)	231, 435, 1258, 1877
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
AseI	ATTAAT	1 cut(s)	1229
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	4 cut(s)	323, 1266, 1304, 1822
AsuHPI	GGTGA	2 cut(s)	308, 1231
AvaII	GGWCC	3 cut(s)	323, 1266, 1822
BaeGI	GKGCMC	2 cut(s)	229, 574
BalI	TGGCCA	1 cut(s)	343
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	576, 1813
Bbv12I	GWGCWC	4 cut(s)	229, 574, 829, 861
BbvCI	CCTCAGC	1 cut(s)	1779
BbvI	GCAGC	8 cut(s)	26, 414, 880, 883, 985, 1109, 1449, 1912
BccI	CCATC	3 cut(s)	161, 215, 264
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
BciVI	GTATCC	1 cut(s)	1176
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	6 cut(s)	325, 512, 607, 641, 761, 1919
BfaI	CTAG	1 cut(s)	1844
BfmI	CTRYAG	2 cut(s)	216, 726
BfuAI	ACCTGC	1 cut(s)	1250
BfuI	GTATCC	1 cut(s)	1176
BglII	AGATCT	1 cut(s)	1764
BisI	GCNGC	9 cut(s)	40, 403, 869, 872, 974, 1123, 1224, 1438, 1901
BlsI	GCNGC	9 cut(s)	41, 404, 870, 873, 975, 1124, 1225, 1439, 1902
Bme1390I	CCNGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
Bme18I	GGWCC	3 cut(s)	323, 1266, 1822
BmgBI	CACGTC	1 cut(s)	582
BmgT120I	GGNCC	4 cut(s)	323, 1266, 1304, 1822
BmiI	GGNNCC	2 cut(s)	324, 1306
BmrFI	CCNGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
BmsI	GCATC	8 cut(s)	163, 629, 658, 802, 887, 1210, 1682, 1698
BpiI	GAAGAC	2 cut(s)	576, 1813
Bpu10I	CCTNAGC	1 cut(s)	1779
BpuEI	CTTGAG	3 cut(s)	224, 845, 1772
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	5 cut(s)	317, 326, 335, 543, 1858
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 1585
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
BseDI	CCNNGG	5 cut(s)	317, 326, 335, 543, 1858
BseGI	GGATG	4 cut(s)	256, 538, 1096, 1225
BseLI	CCNNNNNNNGG	2 cut(s)	84, 1585
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	977, 1224, 1793, 1845
BseRI	GAGGAG	3 cut(s)	357, 705, 1196
BseSI	GKGCMC	2 cut(s)	229, 574
BseXI	GCAGC	8 cut(s)	26, 414, 880, 883, 985, 1109, 1449, 1912
BseYI	CCCAGC	1 cut(s)	1362
BsgI	GTGCAG	1 cut(s)	1108
Bsh1236I	CGCG	1 cut(s)	1485
BshFI	GGCC	3 cut(s)	88, 343, 1305
BsiHKAI	GWGCWC	4 cut(s)	229, 574, 829, 861
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	4 cut(s)	336, 1408, 1558, 1840
BslI	CCNNNNNNNGG	2 cut(s)	84, 1585
BsmAI	GTCTC	6 cut(s)	325, 512, 607, 641, 761, 1919
BsmFI	GGGAC	4 cut(s)	336, 1408, 1558, 1840
BsnI	GGCC	3 cut(s)	88, 343, 1305
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	4 cut(s)	229, 574, 829, 861
Bsp143I	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
BspACI	CCGC	2 cut(s)	1223, 1558
BspANI	GGCC	3 cut(s)	88, 343, 1305
BspCNI	CTCAG	4 cut(s)	976, 1223, 1792, 1844
BspFNI	CGCG	1 cut(s)	1485
BspLI	GGNNCC	2 cut(s)	324, 1306
BspMI	ACCTGC	1 cut(s)	1250
BspPI	GGATC	1 cut(s)	1520
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	366
BssECI	CCNNGG	5 cut(s)	317, 326, 335, 543, 1858
BssMI	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	317, 1858
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
Bst4CI	ACNGT	5 cut(s)	601, 662, 904, 1076, 1155
Bst6I	CTCTTC	2 cut(s)	992, 1053
BstAPI	GCANNNNNTGC	2 cut(s)	356, 626
BstC8I	GCNNGC	7 cut(s)	352, 400, 574, 876, 1785, 1905, 1909
BstDEI	CTNAG	7 cut(s)	963, 1210, 1554, 1726, 1779, 1831, 1925
BstF5I	GGATG	4 cut(s)	256, 538, 1096, 1225
BstFNI	CGCG	1 cut(s)	1485
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	7 cut(s)	138, 199, 835, 1503, 1528, 1606, 1767
BstMAI	GTCTC	6 cut(s)	325, 512, 607, 641, 761, 1919
BstMBI	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 191, 250, 356, 626, 757, 865, 1446
BstNI	CCWGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
BstNSI	RCATGY	2 cut(s)	354, 1911
BstSCI	CCNGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
BstSFI	CTRYAG	2 cut(s)	216, 726
BstSLI	GKGCMC	2 cut(s)	229, 574
BstUI	CGCG	1 cut(s)	1485
BstV1I	GCAGC	8 cut(s)	26, 414, 880, 883, 985, 1109, 1449, 1912
BstV2I	GAAGAC	2 cut(s)	576, 1813
BstX2I	RGATCY	1 cut(s)	1764
BstYI	RGATCY	1 cut(s)	1764
BsuI	GTATCC	1 cut(s)	1176
BsuRI	GGCC	3 cut(s)	88, 343, 1305
BtgZI	GCGATG	2 cut(s)	20, 1500
BtrI	CACGTC	1 cut(s)	582
BtsCI	GGATG	4 cut(s)	256, 538, 1096, 1225
BtsI	GCAGTG	2 cut(s)	361, 412
BtsIMutI	CAGTG	5 cut(s)	361, 412, 909, 992, 1668
BveI	ACCTGC	1 cut(s)	1250
Cac8I	GCNNGC	7 cut(s)	352, 400, 574, 876, 1785, 1905, 1909
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	323, 1266, 1304, 1822
Csp6I	GTAC	6 cut(s)	310, 708, 1077, 1151, 1387, 1712
CviAII	CATG	6 cut(s)	351, 395, 631, 1251, 1670, 1908
CviQI	GTAC	6 cut(s)	310, 708, 1077, 1151, 1387, 1712
DdeI	CTNAG	7 cut(s)	963, 1210, 1554, 1726, 1779, 1831, 1925
DpnI	GATC	7 cut(s)	137, 198, 834, 1502, 1527, 1605, 1766
DpnII	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
DraI	TTTAAA	1 cut(s)	1683
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	992, 1053
EarI	CTCTTC	2 cut(s)	992, 1053
Eco130I	CCWWGG	2 cut(s)	317, 1858
Eco31I	GGTCTC	1 cut(s)	325
Eco32I	GATATC	2 cut(s)	61, 391
Eco47I	GGWCC	3 cut(s)	323, 1266, 1822
Eco57I	CTGAAG	2 cut(s)	1016, 1352
EcoO109I	RGGNCCY	2 cut(s)	323, 1304
EcoRI	GAATTC	1 cut(s)	1877
EcoRII	CCWGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
EcoRV	GATATC	2 cut(s)	61, 391
EcoT14I	CCWWGG	2 cut(s)	317, 1858
EcoT22I	ATGCAT	1 cut(s)	1675
ErhI	CCWWGG	2 cut(s)	317, 1858
FaeI	CATG	6 cut(s)	354, 398, 634, 1254, 1673, 1911
FalI	AAGNNNNNCTT	6 cut(s)	813, 845, 833, 865, 1842, 1874
FaqI	GGGAC	4 cut(s)	336, 1408, 1558, 1840
FatI	CATG	6 cut(s)	350, 394, 630, 1250, 1669, 1907
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	9 cut(s)	40, 403, 869, 872, 974, 1123, 1224, 1438, 1901
FokI	GGATG	4 cut(s)	243, 525, 1103, 1232
Fsp4HI	GCNGC	9 cut(s)	40, 403, 869, 872, 974, 1123, 1224, 1438, 1901
FspBI	CTAG	1 cut(s)	1844
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	9 cut(s)	40, 403, 869, 872, 974, 1123, 1224, 1438, 1901
GsaI	CCCAGC	1 cut(s)	1366
HaeIII	GGCC	3 cut(s)	88, 343, 1305
HapII	CCGG	1 cut(s)	687
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	6 cut(s)	354, 398, 634, 1254, 1673, 1911
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HincII	GTYRAC	1 cut(s)	1294
HindII	GTYRAC	1 cut(s)	1294
HindIII	AAGCTT	2 cut(s)	67, 1400
HinfI	GANTC	8 cut(s)	14, 364, 500, 649, 769, 1571, 1666, 1747
HpaI	GTTAAC	1 cut(s)	1294
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	2 cut(s)	308, 1231
Hpy166II	GTNNAC	6 cut(s)	227, 572, 597, 893, 1266, 1294
Hpy188III	TCNNGA	6 cut(s)	107, 611, 830, 1478, 1751, 1940
Hpy8I	GTNNAC	6 cut(s)	227, 572, 597, 893, 1266, 1294
Hpy99I	CGWCG	1 cut(s)	1159
HpyAV	CCTTC	5 cut(s)	83, 283, 962, 1539, 1903
HpyCH4III	ACNGT	5 cut(s)	601, 662, 904, 1076, 1155
HpyCH4IV	ACGT	2 cut(s)	581, 1714
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 191, 250, 356, 626, 757, 865, 1446
HpyF3I	CTNAG	7 cut(s)	963, 1210, 1554, 1726, 1779, 1831, 1925
HpySE526I	ACGT	2 cut(s)	581, 1714
Hsp92II	CATG	6 cut(s)	354, 398, 634, 1254, 1673, 1911
HspAI	GCGC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	1294
Kzo9I	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
LmnI	GCTCC	3 cut(s)	448, 692, 865
Lsp1109I	GCAGC	8 cut(s)	26, 414, 880, 883, 985, 1109, 1449, 1912
LweI	GCATC	8 cut(s)	163, 629, 658, 802, 887, 1210, 1682, 1698
MaeI	CTAG	1 cut(s)	1844
MaeII	ACGT	2 cut(s)	581, 1714
MaeIII	GTNAC	5 cut(s)	407, 472, 715, 1200, 1663
MalI	GATC	7 cut(s)	137, 198, 834, 1502, 1527, 1605, 1766
MboI	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	1764
MhlI	GDGCHC	4 cut(s)	229, 574, 829, 861
MlsI	TGGCCA	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	343
MlyI	GAGTC	5 cut(s)	358, 643, 763, 1580, 1660
MmeI	TCCRAC	4 cut(s)	186, 500, 1117, 1724
Mox20I	TGGCCA	1 cut(s)	343
Mph1103I	ATGCAT	1 cut(s)	1675
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	8 cut(s)	566, 851, 915, 1229, 1293, 1491, 1682, 1883
MslI	CAYNNNNRTG	1 cut(s)	1694
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
MvnI	CGCG	1 cut(s)	1485
MwoI	GCNNNNNNNGC	8 cut(s)	182, 191, 250, 356, 626, 757, 865, 1446
NdeII	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
NlaIII	CATG	6 cut(s)	354, 398, 634, 1254, 1673, 1911
NlaIV	GGNNCC	2 cut(s)	324, 1306
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	407, 472, 1200, 1663
NsiI	ATGCAT	1 cut(s)	1675
NspI	RCATGY	2 cut(s)	354, 1911
PaeI	GCATGC	2 cut(s)	354, 1911
PaqCI	CACCTGC	1 cut(s)	1250
PfeI	GAWTC	3 cut(s)	14, 500, 1747
PflMI	CCANNNNNTGG	1 cut(s)	1585
PfoI	TCCNGGA	1 cut(s)	924
PkrI	GCNGC	9 cut(s)	41, 404, 870, 873, 975, 1124, 1225, 1439, 1902
PleI	GAGTC	5 cut(s)	358, 643, 763, 1579, 1660
PpsI	GAGTC	5 cut(s)	358, 643, 763, 1579, 1660
PpuMI	RGGWCCY	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	1229
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
PspFI	CCCAGC	1 cut(s)	1362
PspGI	CCWGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
PspN4I	GGNNCC	2 cut(s)	324, 1306
PspPI	GGNCC	4 cut(s)	323, 1266, 1304, 1822
PspPPI	RGGWCCY	1 cut(s)	323
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
PsuI	RGATCY	1 cut(s)	1764
RsaI	GTAC	6 cut(s)	311, 709, 1078, 1152, 1388, 1713
RsaNI	GTAC	6 cut(s)	310, 708, 1077, 1151, 1387, 1712
RseI	CAYNNNNRTG	1 cut(s)	1694
SaqAI	TTAA	8 cut(s)	566, 851, 915, 1229, 1293, 1491, 1682, 1883
SatI	GCNGC	9 cut(s)	40, 403, 869, 872, 974, 1123, 1224, 1438, 1901
Sau3AI	GATC	7 cut(s)	135, 196, 832, 1500, 1525, 1603, 1764
Sau96I	GGNCC	4 cut(s)	323, 1266, 1304, 1822
SchI	GAGTC	5 cut(s)	358, 643, 763, 1580, 1660
ScrFI	CCNGG	8 cut(s)	161, 327, 336, 545, 926, 1055, 1820, 1874
SduI	GDGCHC	4 cut(s)	229, 574, 829, 861
SfaNI	GCATC	8 cut(s)	163, 629, 658, 802, 887, 1210, 1682, 1698
SfcI	CTRYAG	2 cut(s)	216, 726
SinI	GGWCC	3 cut(s)	323, 1266, 1822
SmiMI	CAYNNNNRTG	1 cut(s)	1694
SmlI	CTYRAG	3 cut(s)	239, 860, 1751
SmoI	CTYRAG	3 cut(s)	239, 860, 1751
SphI	GCATGC	2 cut(s)	354, 1911
SsiI	CCGC	2 cut(s)	1223, 1558
SspMI	CTAG	1 cut(s)	1844
StyD4I	CCNGG	8 cut(s)	159, 325, 334, 543, 924, 1053, 1818, 1872
StyI	CCWWGG	2 cut(s)	317, 1858
TaaI	ACNGT	5 cut(s)	601, 662, 904, 1076, 1155
TaiI	ACGT	2 cut(s)	584, 1717
TaqI	TCGA	5 cut(s)	381, 1157, 1425, 1479, 1642
TatI	WGTACW	3 cut(s)	707, 1076, 1386
TauI	GCSGC	1 cut(s)	1226
TfiI	GAWTC	3 cut(s)	14, 500, 1747
Tru1I	TTAA	8 cut(s)	566, 851, 915, 1229, 1293, 1491, 1682, 1883
Tru9I	TTAA	8 cut(s)	566, 851, 915, 1229, 1293, 1491, 1682, 1883
TscAI	CASTG	5 cut(s)	361, 412, 909, 999, 1668
TseFI	GTSAC	4 cut(s)	407, 472, 1200, 1663
TseI	GCWGC	8 cut(s)	39, 402, 868, 871, 973, 1122, 1437, 1900
Tsp45I	GTSAC	4 cut(s)	407, 472, 1200, 1663
TspDTI	ATGAA	2 cut(s)	821, 875
TspRI	CASTG	5 cut(s)	361, 412, 909, 999, 1668
Van91I	CCANNNNNTGG	1 cut(s)	1585
VneI	GTGCAC	2 cut(s)	225, 570
VpaK11BI	GGWCC	3 cut(s)	323, 1266, 1822
VspI	ATTAAT	1 cut(s)	1229
XapI	RAATTY	4 cut(s)	231, 435, 1258, 1877
XceI	RCATGY	2 cut(s)	354, 1911
XspI	CTAG	1 cut(s)	1844
Zsp2I	ATGCAT	1 cut(s)	1675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.