Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

31832186 .. 31838429

Gene Structure 6244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG152600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGACCTGCATCACCTCAACGAAGACGAAGCCCAAGGATCCATCGGCGAGCTCAACGAAGGAGGCGGTGGAAAAGGCGATCACTTCGTCTCAGGCGAACCCAACGAAGCAGGCGGAGGACAAGGCGGTCACTTCGGCTCCGGCGAAATTATTAGTCAAGAAAATATGCTTGAAGAAGATTCGTCAAGTTCAACTACTCATCGCTGCCACAAAATCATTAATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCTCGTGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCTGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAAAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCGGCACATCTAATGTCGGAAAGGAAATAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATACTTGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACCACACAGGCCCCTCTGCCAACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGCTGGGTCAGAGATGTTCTAAAGAAGTACAGAGGGACGAAGCTTGATAAGTTCCATATCTTCTTCGATTTGGACAGCAGCTATACAAGCGAAATTGATGATTGGGTAGAGTTTGCTCTCGAACGCGATGTTAAAGCGTTGATCTTGGAAATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCCTTTACTAAGCGGATTACGGGCGAGTCCCTCCAAGTATTGGTGCTTGAAAATGTTGATCTGAATGGAGAGGTTTTTCAGCATATATCTCATTTTCGAGGACTTGAACAACTATCAGTGACTCGTGCATCTGGTTTAAATCGCATCAGAATGTTTGGTTCTTCTGTACGTTTGAAGTCCTTGGTGGTCAGAAATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATATGCCTGGACCTGAACTCAGTTCCAAATCTAGTGAAAGTGTCCCTTGGCGAGTATGACCTGGAATTCTTAAAAGTAGCCTTCAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTAGTTTTCTGACACAAGAGAAAGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGTGTGCTTGGAGTTGCGAATCTCACCAGATGATGCATGTGTGCTGTTGCAATTGGCGTGTTTTTTGGATGCATCTCCTCGCTTGCAGAAGTTAGTTTTAAAGTTGGACTTTCTAGGGTCGGGGATAAATTTGTGGAAAGCCGAGAGCCATCCGCACAACAACTTAAAGGTGGTTGAGGTTATTGGATTCTTTGATTGCCCAGCAGCGACTGATATTGTCACATTCATAGTGGACAATGCTGCTGGGCTAGAAAGTCTGGTGATCGATCCTGTTGTTCCATGGTGTGAGCATCGTAGAGGAAGGAAGCCTGATGAGTTAATTGAGAAGGAACGAAAAGGGAGGCAGCACGCAATGTCGCTTAGAAGTATGCTGCCAGGCATGGACGGTGGAAACTCTTCTAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

859

Amino Acids

95.66

Weight (kDa)

5.1

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	58 - 262	3.7e-37	tRNA synthetases class I (C) catalytic domain
LRR_At1g61320_AtMIF1	PF23622	579 - 816	1.5e-19	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1415
AasI	GACNNNNNNGTC	1 cut(s)	126
Acc36I	ACCTGC	2 cut(s)	15, 1415
AccB7I	CCANNNNNTGG	1 cut(s)	1750
AccBSI	CCGCTC	1 cut(s)	1287
AccII	CGCG	1 cut(s)	1650
AciI	CCGC	7 cut(s)	66, 114, 126, 1287, 1388, 1723, 2324
AclWI	GGATC	4 cut(s)	33, 46, 1685, 2432
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	5 cut(s)	396, 600, 1423, 2042, 2299
AcuI	CTGAAG	2 cut(s)	1181, 1517
AfaI	GTAC	6 cut(s)	476, 874, 1243, 1317, 1553, 1878
AfiI	CCNNNNNNNGG	2 cut(s)	249, 1750
AgsI	TTSAA	9 cut(s)	173, 192, 986, 1064, 1179, 1760, 1817, 1885, 2062
AjiI	CACGTC	1 cut(s)	747
AjnI	CCWGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
AjuI	GAANNNNNNNTTGG	4 cut(s)	222, 254, 1506, 1538
Alw21I	GWGCWC	5 cut(s)	54, 394, 739, 994, 1026
Alw26I	GTCTC	7 cut(s)	94, 490, 677, 772, 806, 926, 2084
Alw44I	GTGCAC	2 cut(s)	390, 735
AlwI	GGATC	4 cut(s)	33, 46, 1685, 2432
AlwNI	CAGNNNCTG	1 cut(s)	2381
AoxI	GGCC	3 cut(s)	251, 506, 1468
ApaLI	GTGCAC	2 cut(s)	390, 735
ApoI	RAATTY	5 cut(s)	396, 600, 1423, 2042, 2299
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
AseI	ATTAAT	2 cut(s)	219, 1394
Asp700I	GAANNNNTTC	1 cut(s)	2566
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	5 cut(s)	4, 488, 1431, 1469, 1987
AsuHPI	GGTGA	5 cut(s)	5, 473, 1396, 2187, 2443
AvaII	GGWCC	4 cut(s)	4, 488, 1431, 1987
BaeGI	GKGCMC	2 cut(s)	394, 739
BalI	TGGCCA	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	2 cut(s)	255, 1833
BbsI	GAAGAC	3 cut(s)	30, 741, 1978
Bbv12I	GWGCWC	5 cut(s)	54, 394, 739, 994, 1026
BbvCI	CCTCAGC	1 cut(s)	1944
BccI	CCATC	5 cut(s)	50, 326, 380, 429, 2328
BciT130I	CCWGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
BciVI	GTATCC	1 cut(s)	1341
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	7 cut(s)	94, 490, 677, 772, 806, 926, 2084
BfaI	CTAG	4 cut(s)	2009, 2285, 2420, 2571
BfmI	CTRYAG	2 cut(s)	381, 891
BfuAI	ACCTGC	2 cut(s)	15, 1415
BfuI	GTATCC	1 cut(s)	1341
BglII	AGATCT	1 cut(s)	1929
Bme1390I	CCNGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
Bme18I	GGWCC	4 cut(s)	4, 488, 1431, 1987
BmgBI	CACGTC	1 cut(s)	747
BmgT120I	GGNCC	5 cut(s)	4, 488, 1431, 1469, 1987
BmiI	GGNNCC	4 cut(s)	40, 139, 489, 1471
BmrFI	CCNGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
BpiI	GAAGAC	3 cut(s)	30, 741, 1978
Bpu10I	CCTNAGC	1 cut(s)	1944
BpuEI	CTTGAG	3 cut(s)	389, 1010, 1937
Bsa29I	ATCGAT	1 cut(s)	2436
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1890, 2023, 2450
BsaWI	WCCGGW	1 cut(s)	851
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 1750
Bse3DI	GCAATG	2 cut(s)	531, 2529
BseBI	CCWGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
BseCI	ATCGAT	1 cut(s)	2436
BseDI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1890, 2023, 2450
BseGI	GGATG	6 cut(s)	421, 703, 1261, 1390, 2245, 2320
BseLI	CCNNNNNNNGG	2 cut(s)	249, 1750
BseMI	GCAATG	2 cut(s)	531, 2529
BseMII	CTCAG	6 cut(s)	105, 1142, 1389, 1958, 2010, 2171
BseRI	GAGGAG	4 cut(s)	522, 870, 1361, 2238
BseSI	GKGCMC	2 cut(s)	394, 739
BseYI	CCCAGC	3 cut(s)	1527, 2371, 2414
Bsh1236I	CGCG	1 cut(s)	1650
BshFI	GGCC	3 cut(s)	253, 508, 1470
BshVI	ATCGAT	1 cut(s)	2436
BsiHKAI	GWGCWC	5 cut(s)	54, 394, 739, 994, 1026
BsiSI	CCGG	2 cut(s)	141, 852
BslFI	GGGAC	4 cut(s)	501, 1573, 1723, 2005
BslI	CCNNNNNNNGG	2 cut(s)	249, 1750
BsmAI	GTCTC	7 cut(s)	94, 490, 677, 772, 806, 926, 2084
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	4 cut(s)	501, 1573, 1723, 2005
BsnI	GGCC	3 cut(s)	253, 508, 1470
Bso31I	GGTCTC	1 cut(s)	490
Bsp1286I	GDGCHC	5 cut(s)	54, 394, 739, 994, 1026
Bsp19I	CCATGG	1 cut(s)	2450
BspACI	CCGC	7 cut(s)	66, 114, 126, 1287, 1388, 1723, 2324
BspANI	GGCC	3 cut(s)	253, 508, 1470
BspCNI	CTCAG	6 cut(s)	104, 1141, 1388, 1957, 2009, 2170
BspDI	ATCGAT	1 cut(s)	2436
BspFNI	CGCG	1 cut(s)	1650
BspLI	GGNNCC	4 cut(s)	40, 139, 489, 1471
BspMI	ACCTGC	2 cut(s)	15, 1415
BspPI	GGATC	4 cut(s)	33, 46, 1685, 2432
BspTNI	GGTCTC	1 cut(s)	490
BsrBI	CCGCTC	1 cut(s)	1287
BsrDI	GCAATG	2 cut(s)	531, 2529
BssECI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1890, 2023, 2450
BssSI	CACGAG	2 cut(s)	255, 1833
BssT1I	CCWWGG	5 cut(s)	34, 482, 1890, 2023, 2450
Bst2BI	CACGAG	2 cut(s)	255, 1833
Bst2UI	CCWGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
Bst4CI	ACNGT	6 cut(s)	766, 827, 1069, 1241, 1320, 2558
Bst6I	CTCTTC	3 cut(s)	1157, 1218, 2572
BstAPI	GCANNNNNTGC	2 cut(s)	521, 791
BstDSI	CCRYGG	1 cut(s)	2450
BstF5I	GGATG	6 cut(s)	421, 703, 1261, 1390, 2245, 2320
BstFNI	CGCG	1 cut(s)	1650
BstHHI	GCGC	1 cut(s)	785
BstMAI	GTCTC	7 cut(s)	94, 490, 677, 772, 806, 926, 2084
BstMWI	GCNNNNNNNGC	8 cut(s)	347, 356, 415, 521, 791, 922, 1030, 1611
BstNI	CCWGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
BstNSI	RCATGY	2 cut(s)	519, 2211
BstSCI	CCNGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
BstSFI	CTRYAG	2 cut(s)	381, 891
BstSLI	GKGCMC	2 cut(s)	394, 739
BstUI	CGCG	1 cut(s)	1650
BstV2I	GAAGAC	3 cut(s)	30, 741, 1978
BstX2I	RGATCY	2 cut(s)	38, 1929
BstYI	RGATCY	2 cut(s)	38, 1929
Bsu15I	ATCGAT	1 cut(s)	2436
BsuI	GTATCC	1 cut(s)	1341
BsuRI	GGCC	3 cut(s)	253, 508, 1470
BsuTUI	ATCGAT	1 cut(s)	2436
BtgI	CCRYGG	1 cut(s)	2450
BtgZI	GCGATG	2 cut(s)	185, 1665
BtrI	CACGTC	1 cut(s)	747
BtsCI	GGATG	6 cut(s)	421, 703, 1261, 1390, 2245, 2320
BtsI	GCAGTG	2 cut(s)	526, 577
BtsIMutI	CAGTG	5 cut(s)	526, 577, 1074, 1157, 1833
BveI	ACCTGC	2 cut(s)	15, 1415
CaiI	CAGNNNCTG	1 cut(s)	2381
CfoI	GCGC	1 cut(s)	785
Cfr13I	GGNCC	5 cut(s)	4, 488, 1431, 1469, 1987
ClaI	ATCGAT	1 cut(s)	2436
Csp6I	GTAC	6 cut(s)	475, 873, 1242, 1316, 1552, 1877
CviAII	CATG	7 cut(s)	516, 560, 796, 1416, 2208, 2451, 2551
CviQI	GTAC	6 cut(s)	475, 873, 1242, 1316, 1552, 1877
DraI	TTTAAA	2 cut(s)	1848, 2271
DrdI	GACNNNNNNGTC	1 cut(s)	126
DseDI	GACNNNNNNGTC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	3 cut(s)	1157, 1218, 2572
EarI	CTCTTC	3 cut(s)	1157, 1218, 2572
EciI	GGCGGA	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	5 cut(s)	34, 482, 1890, 2023, 2450
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	490
Eco32I	GATATC	2 cut(s)	226, 556
Eco47I	GGWCC	4 cut(s)	4, 488, 1431, 1987
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	1181, 1517
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	2 cut(s)	488, 1469
EcoRI	GAATTC	1 cut(s)	2042
EcoRII	CCWGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
EcoRV	GATATC	2 cut(s)	226, 556
EcoT14I	CCWWGG	5 cut(s)	34, 482, 1890, 2023, 2450
EcoT22I	ATGCAT	2 cut(s)	2209, 2245
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	5 cut(s)	34, 482, 1890, 2023, 2450
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	7 cut(s)	519, 563, 799, 1419, 2211, 2454, 2554
FalI	AAGNNNNNCTT	8 cut(s)	978, 1010, 998, 1030, 2007, 2039, 2264, 2296
FaqI	GGGAC	4 cut(s)	501, 1573, 1723, 2005
FatI	CATG	7 cut(s)	515, 559, 795, 1415, 2207, 2450, 2550
FbaI	TGATCA	1 cut(s)	361
FokI	GGATG	6 cut(s)	408, 690, 1268, 1397, 2252, 2307
FriOI	GRGCYC	1 cut(s)	54
FspBI	CTAG	4 cut(s)	2009, 2285, 2420, 2571
GlaI	GCGC	1 cut(s)	784
GsaI	CCCAGC	3 cut(s)	1531, 2375, 2418
HaeIII	GGCC	3 cut(s)	253, 508, 1470
HapII	CCGG	2 cut(s)	141, 852
HhaI	GCGC	1 cut(s)	785
Hin1II	CATG	7 cut(s)	519, 563, 799, 1419, 2211, 2454, 2554
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HincII	GTYRAC	1 cut(s)	1459
HindII	GTYRAC	1 cut(s)	1459
HindIII	AAGCTT	2 cut(s)	232, 1565
HpaI	GTTAAC	1 cut(s)	1459
HpaII	CCGG	2 cut(s)	141, 852
HphI	GGTGA	5 cut(s)	5, 473, 1396, 2187, 2443
Hpy166II	GTNNAC	7 cut(s)	392, 737, 762, 1058, 1431, 1459, 2404
Hpy188III	TCNNGA	7 cut(s)	158, 272, 776, 995, 1643, 1916, 2105
Hpy8I	GTNNAC	7 cut(s)	392, 737, 762, 1058, 1431, 1459, 2404
Hpy99I	CGWCG	1 cut(s)	1324
HpyAV	CCTTC	8 cut(s)	53, 248, 448, 1127, 1704, 2068, 2466, 2491
HpyCH4III	ACNGT	6 cut(s)	766, 827, 1069, 1241, 1320, 2558
HpyCH4IV	ACGT	2 cut(s)	746, 1879
HpyF10VI	GCNNNNNNNGC	8 cut(s)	347, 356, 415, 521, 791, 922, 1030, 1611
HpySE526I	ACGT	2 cut(s)	746, 1879
Hsp92II	CATG	7 cut(s)	519, 563, 799, 1419, 2211, 2454, 2554
HspAI	GCGC	1 cut(s)	783
Ksp22I	TGATCA	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	1459
LmnI	GCTCC	4 cut(s)	143, 613, 857, 1030
MaeI	CTAG	4 cut(s)	2009, 2285, 2420, 2571
MaeII	ACGT	2 cut(s)	746, 1879
MaeIII	GTNAC	8 cut(s)	128, 572, 637, 880, 1365, 1828, 2160, 2389
MbiI	CCGCTC	1 cut(s)	1287
MfeI	CAATTG	2 cut(s)	510, 2222
MflI	RGATCY	2 cut(s)	38, 1929
MhlI	GDGCHC	5 cut(s)	54, 394, 739, 994, 1026
MlsI	TGGCCA	1 cut(s)	508
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	5 cut(s)	523, 808, 928, 1745, 1825
MmeI	TCCRAC	5 cut(s)	351, 665, 1282, 1889, 2256
Mox20I	TGGCCA	1 cut(s)	508
Mph1103I	ATGCAT	2 cut(s)	2209, 2245
MroXI	GAANNNNTTC	1 cut(s)	2566
MscI	TGGCCA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	1859
Msp20I	TGGCCA	1 cut(s)	508
MspI	CCGG	2 cut(s)	141, 852
MspR9I	CCNGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
MunI	CAATTG	2 cut(s)	510, 2222
MvaI	CCWGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
MvnI	CGCG	1 cut(s)	1650
MwoI	GCNNNNNNNGC	8 cut(s)	347, 356, 415, 521, 791, 922, 1030, 1611
NcoI	CCATGG	1 cut(s)	2450
NlaIII	CATG	7 cut(s)	519, 563, 799, 1419, 2211, 2454, 2554
NlaIV	GGNNCC	4 cut(s)	40, 139, 489, 1471
NmeAIII	GCCGAG	2 cut(s)	229, 2338
NmuCI	GTSAC	6 cut(s)	128, 572, 637, 1365, 1828, 2389
NsiI	ATGCAT	2 cut(s)	2209, 2245
NspI	RCATGY	2 cut(s)	519, 2211
PaeI	GCATGC	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	1415
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 141
PdmI	GAANNNNTTC	1 cut(s)	2566
PfeI	GAWTC	5 cut(s)	179, 665, 1912, 2190, 2358
PflMI	CCANNNNNTGG	1 cut(s)	1750
PfoI	TCCNGGA	1 cut(s)	1089
PleI	GAGTC	5 cut(s)	523, 808, 928, 1744, 1825
PpsI	GAGTC	5 cut(s)	523, 808, 928, 1744, 1825
PpuMI	RGGWCCY	1 cut(s)	488
PshBI	ATTAAT	2 cut(s)	219, 1394
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
PspFI	CCCAGC	3 cut(s)	1527, 2371, 2414
PspGI	CCWGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
PspN4I	GGNNCC	4 cut(s)	40, 139, 489, 1471
PspPI	GGNCC	5 cut(s)	4, 488, 1431, 1469, 1987
PspPPI	RGGWCCY	1 cut(s)	488
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PstNI	CAGNNNCTG	1 cut(s)	2381
PsuI	RGATCY	2 cut(s)	38, 1929
RsaI	GTAC	6 cut(s)	476, 874, 1243, 1317, 1553, 1878
RsaNI	GTAC	6 cut(s)	475, 873, 1242, 1316, 1552, 1877
RseI	CAYNNNNRTG	1 cut(s)	1859
SacI	GAGCTC	1 cut(s)	54
Sau96I	GGNCC	5 cut(s)	4, 488, 1431, 1469, 1987
SchI	GAGTC	5 cut(s)	523, 808, 928, 1745, 1825
ScrFI	CCNGG	9 cut(s)	326, 492, 501, 710, 1091, 1220, 1985, 2039, 2547
SduI	GDGCHC	5 cut(s)	54, 394, 739, 994, 1026
SfcI	CTRYAG	2 cut(s)	381, 891
SinI	GGWCC	4 cut(s)	4, 488, 1431, 1987
SmiMI	CAYNNNNRTG	1 cut(s)	1859
SmlI	CTYRAG	3 cut(s)	404, 1025, 1916
SmoI	CTYRAG	3 cut(s)	404, 1025, 1916
SphI	GCATGC	1 cut(s)	519
SsiI	CCGC	7 cut(s)	66, 114, 126, 1287, 1388, 1723, 2324
SspMI	CTAG	4 cut(s)	2009, 2285, 2420, 2571
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	9 cut(s)	324, 490, 499, 708, 1089, 1218, 1983, 2037, 2545
StyI	CCWWGG	5 cut(s)	34, 482, 1890, 2023, 2450
TaaI	ACNGT	6 cut(s)	766, 827, 1069, 1241, 1320, 2558
TaiI	ACGT	2 cut(s)	749, 1882
TaqI	TCGA	6 cut(s)	546, 1322, 1590, 1644, 1807, 2436
TatI	WGTACW	3 cut(s)	872, 1241, 1551
TauI	GCSGC	2 cut(s)	1290, 1391
TfiI	GAWTC	5 cut(s)	179, 665, 1912, 2190, 2358
TscAI	CASTG	5 cut(s)	526, 577, 1074, 1164, 1833
TseFI	GTSAC	6 cut(s)	128, 572, 637, 1365, 1828, 2389
Tsp45I	GTSAC	6 cut(s)	128, 572, 637, 1365, 1828, 2389
TspDTI	ATGAA	3 cut(s)	986, 1040, 2386
TspRI	CASTG	5 cut(s)	526, 577, 1074, 1164, 1833
Van91I	CCANNNNNTGG	1 cut(s)	1750
VneI	GTGCAC	2 cut(s)	390, 735
VpaK11BI	GGWCC	4 cut(s)	4, 488, 1431, 1987
VspI	ATTAAT	2 cut(s)	219, 1394
XapI	RAATTY	5 cut(s)	396, 600, 1423, 2042, 2299
XceI	RCATGY	2 cut(s)	519, 2211
XmnI	GAANNNNTTC	1 cut(s)	2566
XspI	CTAG	4 cut(s)	2009, 2285, 2420, 2571
Zsp2I	ATGCAT	2 cut(s)	2209, 2245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.