Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031056.1

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2090

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031056.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1328 bp

actgtacttcttctgtggatgtgaggaaaggaggaaagctggatttgagctgcacatctaatgtcggaaaggaaatagtaccgtcaaacctttctgatataccagagtggatacttgttgatattctgtcactcctctcagtcaaggatgcggcattaatcagtttcacctgcaaagcatgggaaaatttgtggacctattctacaaatctgacttttgttgactacacaggcccctctgccaaccttgacattggactgaagattagagagagggaaaagtatgttggctgggtcagagatgttctaaagaagtacagagggacgaagcttgataagttccatatcttcttcgatttggacagcagctataaaagcgaaattgatgattgggtagagtttgctctcgaacacgatgttaaagcattgatcttggaaatggtcagcccttttgatccttctcgtaataactattcctttactaagcggattacgggcgagtccctccaagtattggtgcttgaaaatgttgatctgaatggagaggtttttcagcatatatctcattttcgaggacttgaacaactatcagtgactggtgcatctggtttaaatcgcatcagaatgtttggttcttctgtacgtttgaagtccttagtggtcagaaattgttggaatcttgagattattgagatctgtgatttacctcagcttgctttctttgagtttgagggaagacctatctgcctggacctgaactcagttccaaatctagtgaaagtgtcccttggcgaggatgacctggaattcttaaaagttgccttcaagcagcttgcttgctgtctctgtcagctaagaactcttactctggataacacacttagttttctgacacaagagaaagttgtctttcctattcctcagttaccagagcttgtgtgcttggagttgcgaatctcaccagatgatgcatgtgctgttgcaattggcgtgttttttggatgcatctcctcgcttgcagaagttagttttaaagggtcggggataaatttgtggaaagccgagagccatccgcacaacaacttaaaggtggttgaggttattggattctttgattgcccagcagcgactgatattgtcacattcatagtggacaatgctgctgggctagaaagtctggtgatcgatcctgttgtcccatggtgtgagcatcgtagaggaaggaagcctgatgagttaattgagaaggaacgaaaagggaggcagcacgcaatgtcgcttagaagtatgctgccaggcatggacggtggaaactcttctagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

441

Amino Acids

49.33

Weight (kDa)

5.22

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	513
AciI	CCGC	3 cut(s)	151, 486, 1072
AclWI	GGATC	2 cut(s)	448, 1180
AcsI	RAATTY	3 cut(s)	186, 805, 1047
AcuI	CTGAAG	1 cut(s)	280
AfaI	GTAC	4 cut(s)	6, 80, 316, 641
AfiI	CCNNNNNNNGG	2 cut(s)	513, 792
AgsI	TTSAA	4 cut(s)	523, 580, 648, 825
AjnI	CCWGG	3 cut(s)	746, 800, 1293
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	39, 50, 330, 368, 711, 831, 852, 933
AluI	AGCT	8 cut(s)	39, 50, 330, 368, 711, 831, 852, 933
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	2 cut(s)	448, 1180
AlwNI	CAGNNNCTG	2 cut(s)	595, 1129
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	7 cut(s)	50, 365, 828, 1123, 1159, 1263, 1290
ApoI	RAATTY	3 cut(s)	186, 805, 1047
AseI	ATTAAT	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	1314
AspS9I	GGNCC	3 cut(s)	194, 232, 750
AsuHPI	GGTGA	3 cut(s)	159, 950, 1191
AvaII	GGWCC	2 cut(s)	194, 750
BbsI	GAAGAC	1 cut(s)	741
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	7 cut(s)	37, 377, 840, 1135, 1146, 1275, 1277
BccI	CCATC	1 cut(s)	1076
BciT130I	CCWGG	3 cut(s)	748, 802, 1295
BciVI	GTATCC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	3 cut(s)	772, 1168, 1319
BfuAI	ACCTGC	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	8 cut(s)	51, 152, 366, 829, 1124, 1160, 1264, 1291
BlsI	GCNGC	8 cut(s)	52, 153, 367, 830, 1125, 1161, 1265, 1292
Bme1390I	CCNGG	3 cut(s)	748, 802, 1295
Bme18I	GGWCC	2 cut(s)	194, 750
BmgT120I	GGNCC	3 cut(s)	194, 232, 750
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	748, 802, 1295
BmsI	GCATC	7 cut(s)	138, 610, 626, 957, 991, 1013, 1218
BpiI	GAAGAC	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	700
Bsa29I	ATCGAT	1 cut(s)	1184
BsaJI	CCNNGG	2 cut(s)	786, 1198
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 792
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	1277
BseBI	CCWGG	3 cut(s)	748, 802, 1295
BseCI	ATCGAT	1 cut(s)	1184
BseDI	CCNNGG	2 cut(s)	786, 1198
BseGI	GGATG	5 cut(s)	24, 153, 801, 1006, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	513, 792
BseMI	GCAATG	1 cut(s)	1277
BseMII	CTCAG	4 cut(s)	152, 721, 773, 934
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	2 cut(s)	124, 999
BseXI	GCAGC	7 cut(s)	37, 377, 840, 1135, 1146, 1275, 1277
BseYI	CCCAGC	3 cut(s)	290, 1119, 1162
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	1184
BslFI	GGGAC	4 cut(s)	336, 486, 768, 1180
BslI	CCNNNNNNNGG	2 cut(s)	513, 792
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	4 cut(s)	336, 486, 768, 1180
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
Bsp19I	CCATGG	1 cut(s)	1198
BspACI	CCGC	3 cut(s)	151, 486, 1072
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	4 cut(s)	151, 720, 772, 933
BspDI	ATCGAT	1 cut(s)	1184
BspLI	GGNNCC	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	448, 1180
BsrDI	GCAATG	1 cut(s)	1277
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	786, 1198
BssMI	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
BssT1I	CCWWGG	2 cut(s)	786, 1198
Bst2UI	CCWGG	3 cut(s)	748, 802, 1295
Bst4CI	ACNGT	3 cut(s)	4, 83, 1306
Bst6I	CTCTTC	1 cut(s)	1320
BstC8I	GCNNGC	5 cut(s)	713, 833, 837, 1016, 1268
BstDEI	CTNAG	9 cut(s)	138, 482, 654, 707, 759, 853, 880, 920, 1279
BstDSI	CCRYGG	1 cut(s)	1198
BstENI	CCTNNNNNAGG	1 cut(s)	790
BstF5I	GGATG	5 cut(s)	24, 153, 801, 1006, 1068
BstKTI	GATC	6 cut(s)	431, 456, 534, 695, 1184, 1188
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	3 cut(s)	748, 802, 1295
BstNSI	RCATGY	1 cut(s)	974
BstSCI	CCNGG	3 cut(s)	746, 800, 1293
BstV1I	GCAGC	7 cut(s)	37, 377, 840, 1135, 1146, 1275, 1277
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
Bsu15I	ATCGAT	1 cut(s)	1184
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	1184
BtgI	CCRYGG	1 cut(s)	1198
BtsCI	GGATG	5 cut(s)	24, 153, 801, 1006, 1068
BtsIMutI	CAGTG	1 cut(s)	596
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	5 cut(s)	713, 833, 837, 1016, 1268
CaiI	CAGNNNCTG	2 cut(s)	595, 1129
Cfr13I	GGNCC	3 cut(s)	194, 232, 750
ClaI	ATCGAT	1 cut(s)	1184
Csp6I	GTAC	4 cut(s)	5, 79, 315, 640
CviAII	CATG	4 cut(s)	179, 971, 1199, 1299
CviQI	GTAC	4 cut(s)	5, 79, 315, 640
DdeI	CTNAG	9 cut(s)	138, 482, 654, 707, 759, 853, 880, 920, 1279
DpnI	GATC	6 cut(s)	430, 455, 533, 694, 1183, 1187
DpnII	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
DraI	TTTAAA	2 cut(s)	611, 1032
Eam1104I	CTCTTC	1 cut(s)	1320
EarI	CTCTTC	1 cut(s)	1320
Eco130I	CCWWGG	2 cut(s)	786, 1198
Eco47I	GGWCC	2 cut(s)	194, 750
Eco57I	CTGAAG	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	3 cut(s)	746, 800, 1293
EcoT14I	CCWWGG	2 cut(s)	786, 1198
EcoT22I	ATGCAT	2 cut(s)	972, 1006
ErhI	CCWWGG	2 cut(s)	786, 1198
FaeI	CATG	4 cut(s)	182, 974, 1202, 1302
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	4 cut(s)	336, 486, 768, 1180
FatI	CATG	4 cut(s)	178, 970, 1198, 1298
Fnu4HI	GCNGC	8 cut(s)	51, 152, 366, 829, 1124, 1160, 1264, 1291
FokI	GGATG	5 cut(s)	31, 160, 808, 1013, 1055
Fsp4HI	GCNGC	8 cut(s)	51, 152, 366, 829, 1124, 1160, 1264, 1291
FspBI	CTAG	3 cut(s)	772, 1168, 1319
GluI	GCNGC	8 cut(s)	51, 152, 366, 829, 1124, 1160, 1264, 1291
GsaI	CCCAGC	3 cut(s)	294, 1123, 1166
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	182, 974, 1202, 1302
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	4 cut(s)	499, 675, 953, 1106
HphI	GGTGA	3 cut(s)	159, 950, 1191
Hpy166II	GTNNAC	3 cut(s)	194, 222, 1152
Hpy188I	TCNGA	8 cut(s)	67, 96, 212, 298, 536, 622, 664, 890
Hpy188III	TCNNGA	3 cut(s)	406, 679, 868
Hpy8I	GTNNAC	3 cut(s)	194, 222, 1152
HpyAV	CCTTC	4 cut(s)	467, 831, 1214, 1239
HpyCH4III	ACNGT	3 cut(s)	4, 83, 1306
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	7 cut(s)	53, 173, 601, 970, 982, 1004, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	9 cut(s)	138, 482, 654, 707, 759, 853, 880, 920, 1279
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	4 cut(s)	182, 974, 1202, 1302
Kzo9I	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
Lsp1109I	GCAGC	7 cut(s)	37, 377, 840, 1135, 1146, 1275, 1277
LweI	GCATC	7 cut(s)	138, 610, 626, 957, 991, 1013, 1218
MaeI	CTAG	3 cut(s)	772, 1168, 1319
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	4 cut(s)	128, 591, 923, 1137
MalI	GATC	6 cut(s)	430, 455, 533, 694, 1183, 1187
MboI	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
MboII	GAAGA	6 cut(s)	273, 339, 342, 626, 746, 1307
MfeI	CAATTG	1 cut(s)	983
MflI	RGATCY	1 cut(s)	692
MluCI	AATT	7 cut(s)	186, 380, 666, 805, 983, 1047, 1238
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	45, 652
Mph1103I	ATGCAT	2 cut(s)	972, 1006
MroXI	GAANNNNTTC	1 cut(s)	1314
MseI	TTAA	7 cut(s)	157, 419, 610, 811, 1031, 1084, 1237
MslI	CAYNNNNRTG	1 cut(s)	622
MspR9I	CCNGG	3 cut(s)	748, 802, 1295
MunI	CAATTG	1 cut(s)	983
MvaI	CCWGG	3 cut(s)	748, 802, 1295
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	1198
NdeII	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
NlaIII	CATG	4 cut(s)	182, 974, 1202, 1302
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	1086
NmuCI	GTSAC	3 cut(s)	128, 591, 1137
NsiI	ATGCAT	2 cut(s)	972, 1006
NspI	RCATGY	1 cut(s)	974
PaqCI	CACCTGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	1314
PfeI	GAWTC	3 cut(s)	675, 953, 1106
PflMI	CCANNNNNTGG	1 cut(s)	513
PkrI	GCNGC	8 cut(s)	52, 153, 367, 830, 1125, 1161, 1265, 1292
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	746, 800, 1293
PspFI	CCCAGC	3 cut(s)	290, 1119, 1162
PspGI	CCWGG	3 cut(s)	746, 800, 1293
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	194, 232, 750
PstNI	CAGNNNCTG	2 cut(s)	595, 1129
PsuI	RGATCY	1 cut(s)	692
RsaI	GTAC	4 cut(s)	6, 80, 316, 641
RsaNI	GTAC	4 cut(s)	5, 79, 315, 640
RseI	CAYNNNNRTG	1 cut(s)	622
SaqAI	TTAA	7 cut(s)	157, 419, 610, 811, 1031, 1084, 1237
SatI	GCNGC	8 cut(s)	51, 152, 366, 829, 1124, 1160, 1264, 1291
Sau3AI	GATC	6 cut(s)	428, 453, 531, 692, 1181, 1185
Sau96I	GGNCC	3 cut(s)	194, 232, 750
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	3 cut(s)	748, 802, 1295
SfaNI	GCATC	7 cut(s)	138, 610, 626, 957, 991, 1013, 1218
SinI	GGWCC	2 cut(s)	194, 750
SmiMI	CAYNNNNRTG	1 cut(s)	622
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	7 cut(s)	186, 380, 666, 805, 983, 1047, 1238
SsiI	CCGC	3 cut(s)	151, 486, 1072
SspMI	CTAG	3 cut(s)	772, 1168, 1319
StyD4I	CCNGG	3 cut(s)	746, 800, 1293
StyI	CCWWGG	2 cut(s)	786, 1198
TaaI	ACNGT	3 cut(s)	4, 83, 1306
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	4 cut(s)	353, 407, 570, 1184
TasI	AATT	7 cut(s)	186, 380, 666, 805, 983, 1047, 1238
TatI	WGTACW	2 cut(s)	4, 314
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	675, 953, 1106
Tru1I	TTAA	7 cut(s)	157, 419, 610, 811, 1031, 1084, 1237
Tru9I	TTAA	7 cut(s)	157, 419, 610, 811, 1031, 1084, 1237
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	3 cut(s)	128, 591, 1137
TseI	GCWGC	7 cut(s)	50, 365, 828, 1123, 1159, 1263, 1290
Tsp45I	GTSAC	3 cut(s)	128, 591, 1137
TspDTI	ATGAA	1 cut(s)	1134
TspRI	CASTG	1 cut(s)	596
Van91I	CCANNNNNTGG	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	194, 750
VspI	ATTAAT	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	790
XapI	RAATTY	3 cut(s)	186, 805, 1047
XceI	RCATGY	1 cut(s)	974
XmnI	GAANNNNTTC	1 cut(s)	1314
XspI	CTAG	3 cut(s)	772, 1168, 1319
Zsp2I	ATGCAT	2 cut(s)	972, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.