RchiOBHm_Chr7g0191131

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004554
Physical Location & Seq
Reverse (-)
9974545 .. 9976517
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17077

Sequence Viewer

Length: 906 bp
ATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCCTTTACTAAGCGGATTACGGGCGAGTCCCTCCAAGTGTTGGTGCTTGAAAATGTTGATCTGAATGGAGAGGTTTTTCAGCATATATCTCATTTTCGAGGACTTGAACAACTATCAGTGACTGGTGCATCTGGTTTAAATCGCATCAGAATGTTTGGTTCTTCTGTACGTTTGAAGTCCTTAGTGGTCAGATATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATAAGCCTGGACCTGAACTCAGTTCCAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCTTAAAAGTAGCCTTCAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTGGTTTTCTGACACAAGAGATTGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGTGTGCTTGGAGTTGCGAATCTCACCAGATGATGCATGTGTGCTGTTGCAATTGGCATGTTTTTTGGATGCATCTCCTCGCTTGCAGAAGTTAGTTTTAAAGTTTGACTTTCTAGGGTCGGGGATAAATTTGTGGAAAGCCGAGAGCCATCCGCACAAAAACTTAAAGGTGGTTGAGGTTATTGGATTCTTTGATTGCCCAGCAGCGACTGATATTGTCACATTCATAGTGGACAATGCTGCTGGGCTAGAAAGTCTGGTGATCGATCCTGTTGTCCCATGGTGTGAGCATCGTAGAGGAAGGAAGCCTGATGAGTTAATTGAGAAGGAACGAAAAGGGAGGCAGCACGCAATGTCGCTTAGAAGTATGCTGCCAGGCATGGACGGTGGAAACTCTTCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

301

Amino Acids

33.71

Weight (kDa)

5.36

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 21 - 258 1.3e-20 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 2 cut(s) 49, 650
AclWI GGATC 2 cut(s) 11, 758
AcsI RAATTY 2 cut(s) 368, 625
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 76, 355
AgsI TTSAA 4 cut(s) 86, 143, 211, 388
AjnI CCWGG 3 cut(s) 309, 363, 871
AluBI AGCT 4 cut(s) 274, 394, 415, 496
AluI AGCT 4 cut(s) 274, 394, 415, 496
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 11, 758
AlwNI CAGNNNCTG 2 cut(s) 158, 707
ApeKI GCWGC 5 cut(s) 391, 701, 737, 841, 868
ApoI RAATTY 2 cut(s) 368, 625
Asp700I GAANNNNTTC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 513, 769
AvaII GGWCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 5 cut(s) 403, 713, 724, 853, 855
BccI CCATC 1 cut(s) 654
BciT130I CCWGG 3 cut(s) 311, 365, 873
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 4 cut(s) 335, 611, 746, 897
BglII AGATCT 1 cut(s) 255
BisI GCNGC 5 cut(s) 392, 702, 738, 842, 869
BlsI GCNGC 5 cut(s) 393, 703, 739, 843, 870
Bme1390I CCNGG 3 cut(s) 311, 365, 873
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 311, 365, 873
BmsI GCATC 6 cut(s) 173, 189, 520, 556, 578, 796
BpiI GAAGAC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 349, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 355
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 3 cut(s) 311, 365, 873
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 2 cut(s) 349, 776
BseGI GGATG 3 cut(s) 364, 571, 646
BseLI CCNNNNNNNGG 2 cut(s) 76, 355
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 284, 336, 497
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 564
BseXI GCAGC 5 cut(s) 403, 713, 724, 853, 855
BseYI CCCAGC 2 cut(s) 697, 740
BshVI ATCGAT 1 cut(s) 762
BslFI GGGAC 3 cut(s) 49, 331, 758
BslI CCNNNNNNNGG 2 cut(s) 76, 355
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 3 cut(s) 49, 331, 758
Bsp143I GATC 5 cut(s) 16, 94, 255, 759, 763
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 2 cut(s) 49, 650
BspCNI CTCAG 3 cut(s) 283, 335, 496
BspDI ATCGAT 1 cut(s) 762
BspPI GGATC 2 cut(s) 11, 758
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 349, 776
BssMI GATC 5 cut(s) 16, 94, 255, 759, 763
BssT1I CCWWGG 2 cut(s) 349, 776
Bst2UI CCWGG 3 cut(s) 311, 365, 873
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 1 cut(s) 898
BstC8I GCNNGC 5 cut(s) 276, 396, 400, 581, 846
BstDEI CTNAG 7 cut(s) 45, 217, 270, 322, 416, 483, 857
BstDSI CCRYGG 1 cut(s) 776
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 364, 571, 646
BstKTI GATC 5 cut(s) 19, 97, 258, 762, 766
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 5 cut(s) 16, 94, 255, 759, 763
BstNI CCWGG 3 cut(s) 311, 365, 873
BstNSI RCATGY 2 cut(s) 537, 558
BstSCI CCNGG 3 cut(s) 309, 363, 871
BstV1I GCAGC 5 cut(s) 403, 713, 724, 853, 855
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 762
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 776
BtsCI GGATG 3 cut(s) 364, 571, 646
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 5 cut(s) 276, 396, 400, 581, 846
CaiI CAGNNNCTG 2 cut(s) 158, 707
Cfr13I GGNCC 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 762
Csp6I GTAC 1 cut(s) 203
CviAII CATG 4 cut(s) 534, 555, 777, 877
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 7 cut(s) 45, 217, 270, 322, 416, 483, 857
DpnI GATC 5 cut(s) 18, 96, 257, 761, 765
DpnII GATC 5 cut(s) 16, 94, 255, 759, 763
DraI TTTAAA 2 cut(s) 174, 597
Eam1104I CTCTTC 1 cut(s) 898
EarI CTCTTC 1 cut(s) 898
Eco130I CCWWGG 2 cut(s) 349, 776
Eco47I GGWCC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 3 cut(s) 309, 363, 871
EcoT14I CCWWGG 2 cut(s) 349, 776
EcoT22I ATGCAT 2 cut(s) 535, 571
ErhI CCWWGG 2 cut(s) 349, 776
FaeI CATG 4 cut(s) 537, 558, 780, 880
FaiI YATR 9 cut(s) 120, 122, 305, 535, 556, 725, 778, 866, 878
FalI AAGNNNNNCTT 4 cut(s) 333, 365, 590, 622
FaqI GGGAC 3 cut(s) 49, 331, 758
FatI CATG 4 cut(s) 533, 554, 776, 876
Fnu4HI GCNGC 5 cut(s) 392, 702, 738, 842, 869
FokI GGATG 3 cut(s) 371, 578, 633
Fsp4HI GCNGC 5 cut(s) 392, 702, 738, 842, 869
FspBI CTAG 4 cut(s) 335, 611, 746, 897
GluI GCNGC 5 cut(s) 392, 702, 738, 842, 869
GsaI CCCAGC 2 cut(s) 701, 744
Hin1II CATG 4 cut(s) 537, 558, 780, 880
HinfI GANTC 4 cut(s) 62, 238, 516, 684
HphI GGTGA 2 cut(s) 513, 769
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 4 cut(s) 99, 185, 227, 453
Hpy188III TCNNGA 2 cut(s) 242, 431
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 30, 394, 792, 817
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 5 cut(s) 164, 533, 547, 569, 583
HpyF3I CTNAG 7 cut(s) 45, 217, 270, 322, 416, 483, 857
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 4 cut(s) 537, 558, 780, 880
Kzo9I GATC 5 cut(s) 16, 94, 255, 759, 763
Lsp1109I GCAGC 5 cut(s) 403, 713, 724, 853, 855
LweI GCATC 6 cut(s) 173, 189, 520, 556, 578, 796
MaeI CTAG 4 cut(s) 335, 611, 746, 897
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 154, 486, 715
MalI GATC 5 cut(s) 18, 96, 257, 761, 765
MboI GATC 5 cut(s) 16, 94, 255, 759, 763
MboII GAAGA 3 cut(s) 189, 309, 885
MfeI CAATTG 1 cut(s) 548
MflI RGATCY 1 cut(s) 255
MluCI AATT 4 cut(s) 368, 548, 625, 816
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 215
Mph1103I ATGCAT 2 cut(s) 535, 571
MroXI GAANNNNTTC 1 cut(s) 892
MseI TTAA 5 cut(s) 173, 374, 596, 662, 815
MslI CAYNNNNRTG 1 cut(s) 185
MspR9I CCNGG 3 cut(s) 311, 365, 873
MunI CAATTG 1 cut(s) 548
MvaI CCWGG 3 cut(s) 311, 365, 873
NcoI CCATGG 1 cut(s) 776
NdeII GATC 5 cut(s) 16, 94, 255, 759, 763
NlaIII CATG 4 cut(s) 537, 558, 780, 880
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 2 cut(s) 154, 715
NsiI ATGCAT 2 cut(s) 535, 571
NspI RCATGY 2 cut(s) 537, 558
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 3 cut(s) 238, 516, 684
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 5 cut(s) 393, 703, 739, 843, 870
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 309, 363, 871
PspFI CCCAGC 2 cut(s) 697, 740
PspGI CCWGG 3 cut(s) 309, 363, 871
PspPI GGNCC 1 cut(s) 313
PstNI CAGNNNCTG 2 cut(s) 158, 707
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 5 cut(s) 173, 374, 596, 662, 815
SatI GCNGC 5 cut(s) 392, 702, 738, 842, 869
Sau3AI GATC 5 cut(s) 16, 94, 255, 759, 763
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 311, 365, 873
SfaNI GCATC 6 cut(s) 173, 189, 520, 556, 578, 796
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 4 cut(s) 368, 548, 625, 816
SsiI CCGC 2 cut(s) 49, 650
SspMI CTAG 4 cut(s) 335, 611, 746, 897
StyD4I CCNGG 3 cut(s) 309, 363, 871
StyI CCWWGG 2 cut(s) 349, 776
TaaI ACNGT 1 cut(s) 884
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 133, 762
TasI AATT 4 cut(s) 368, 548, 625, 816
TfiI GAWTC 3 cut(s) 238, 516, 684
Tru1I TTAA 5 cut(s) 173, 374, 596, 662, 815
Tru9I TTAA 5 cut(s) 173, 374, 596, 662, 815
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 154, 715
TseI GCWGC 5 cut(s) 391, 701, 737, 841, 868
Tsp45I GTSAC 2 cut(s) 154, 715
TspDTI ATGAA 1 cut(s) 712
TspRI CASTG 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 368, 625
XceI RCATGY 2 cut(s) 537, 558
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 4 cut(s) 335, 611, 746, 897
Zsp2I ATGCAT 2 cut(s) 535, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.