Rmu_sc0030373.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030373.1
OG0004554
Physical Location & Seq
Forward (+)
1347 .. 2685
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030373.1_g000002.1.cds

Sequence Viewer

Length: 480 bp
atggtcggttcttcagtacgtttgaagtccttagtggtcagagattgctggaacctcgagattgttgagatctgtgatctacctcagcttgctttctttcggtatgagggaacacctatatgcctggacctgaatagagttcgaaatctagtgaaagtgtcccttggcgaggatgacctggaattccttaaacttgcgttaaagcagcttgcttgctgtctctgtcagctaagaactcttacgctagctaacacacttaattttctgttagcagagcttgagtacttggagttgcgaatcgaagccgatgatgcatgtgttctgttgcagttggcgtattttttggatgcatctcctcgcttgcaaaagttattgattaaggagagaggccacttcagttcgacgaggtacttcgtcgaggaggtcatcaccagcttcgatgagaccaatctccactgctcttgggttgacatgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

159

Amino Acids

18.31

Weight (kDa)

4.85

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 3 cut(s) 18, 284, 410
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 123, 177
AluBI AGCT 6 cut(s) 88, 208, 229, 248, 277, 435
AluI AGCT 6 cut(s) 88, 208, 229, 248, 277, 435
Alw26I GTCTC 2 cut(s) 224, 437
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 125, 179
BcoDI GTCTC 2 cut(s) 224, 437
BfaI CTAG 2 cut(s) 149, 245
BglII AGATCT 1 cut(s) 69
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 125, 179
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 2 cut(s) 125, 179
BmsI GCATC 3 cut(s) 301, 337, 359
BmtI GCTAGC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 125, 179
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 178, 352
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 345, 434
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 224, 437
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 69, 76
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 69, 76
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 125, 179
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 5 cut(s) 90, 210, 214, 246, 362
BstDEI CTNAG 3 cut(s) 31, 84, 230
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 178, 352
BstKTI GATC 2 cut(s) 72, 79
BstMAI GTCTC 2 cut(s) 224, 437
BstMBI GATC 2 cut(s) 69, 76
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 125, 179
BstNSI RCATGY 2 cut(s) 318, 475
BstSCI CCNGG 2 cut(s) 123, 177
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 2 cut(s) 178, 352
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 5 cut(s) 90, 210, 214, 246, 362
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 3 cut(s) 17, 283, 409
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 2 cut(s) 315, 472
CviJI RGCY 8 cut(s) 88, 208, 229, 248, 277, 305, 390, 435
CviKI_1 RGCY 8 cut(s) 88, 208, 229, 248, 277, 305, 390, 435
CviQI GTAC 3 cut(s) 17, 283, 409
DdeI CTNAG 3 cut(s) 31, 84, 230
DpnI GATC 2 cut(s) 71, 78
DpnII GATC 2 cut(s) 69, 76
Eco130I CCWWGG 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 379
Eco88I CYCGRG 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 123, 177
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 2 cut(s) 316, 352
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 318, 475
FaiI YATR 5 cut(s) 105, 119, 121, 316, 473
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 314, 471
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 2 cut(s) 185, 359
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 149, 245
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 390
Hin1II CATG 2 cut(s) 318, 475
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 1 cut(s) 297
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 2 cut(s) 406, 419
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 314, 328, 350, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 31, 84, 230
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 318, 475
Kzo9I GATC 2 cut(s) 69, 76
LpnPI CCDG 7 cut(s) 34, 110, 137, 143, 164, 191, 445
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 301, 337, 359
MaeI CTAG 2 cut(s) 149, 245
MaeII ACGT 1 cut(s) 19
MalI GATC 2 cut(s) 71, 78
MboI GATC 2 cut(s) 69, 76
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 69
MluCI AATT 2 cut(s) 182, 259
MnlI CCTC 9 cut(s) 65, 93, 100, 163, 366, 380, 399, 412, 415
Mph1103I ATGCAT 2 cut(s) 316, 352
MseI TTAA 5 cut(s) 189, 200, 258, 378, 478
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 125, 179
MvaI CCWGG 2 cut(s) 125, 179
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 69, 76
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 318, 475
NlaIV GGNNCC 1 cut(s) 53
NsiI ATGCAT 2 cut(s) 316, 352
NspI RCATGY 2 cut(s) 318, 475
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 56
PciI ACATGT 1 cut(s) 471
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 207
PscI ACATGT 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 123, 177
PspGI CCWGG 2 cut(s) 123, 177
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 18, 284, 410
RsaNI GTAC 3 cut(s) 17, 283, 409
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 5 cut(s) 189, 200, 258, 378, 478
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 69, 76
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 125, 179
SfaNI GCATC 3 cut(s) 301, 337, 359
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 56, 278
SmoI CTYRAG 2 cut(s) 56, 278
Sse9I AATT 2 cut(s) 182, 259
SspMI CTAG 2 cut(s) 149, 245
StyD4I CCNGG 2 cut(s) 123, 177
StyI CCWWGG 1 cut(s) 163
TaiI ACGT 1 cut(s) 22
TaqI TCGA 6 cut(s) 57, 142, 300, 401, 417, 438
TasI AATT 2 cut(s) 182, 259
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 5 cut(s) 189, 200, 258, 378, 478
Tru9I TTAA 5 cut(s) 189, 200, 258, 378, 478
TscAI CASTG 1 cut(s) 461
TseI GCWGC 1 cut(s) 205
TspRI CASTG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 182
XceI RCATGY 2 cut(s) 318, 475
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 149, 245
ZrmI AGTACT 1 cut(s) 284
Zsp2I ATGCAT 2 cut(s) 316, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.