Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

30072444 .. 30079226

Gene Structure 6783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG137700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCTCGTGCATGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTACCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAATAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAAAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACGTAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCTGCACATCTAATGTCGGAAAGGAAATAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATACTTGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACCACACAGGCCCCTCTGCCAACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGCTGGGTCAGAGATGTTCTAAAGAAGTACAGAGGGACGAAGCTTGATAAGTTCCATATCTTCTTCGATTTGGACAGCAGCTATACAAGCGAAATTGATGATTGGGTAGAGTTTGCTCTCGAACGCGATGTTAAAGCGTTGATCTTGGAAATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCCTTTACTAAGCGGATTACGGGCGAGTCCCTCCAAGTATTGGTGCTTGAAAATGTTGATCTGAATGGAGAGGTTTTTCAGCATATATCTCATTTTCGAGGACTTGAACAACTATCAGTGACTGGTGCATCTGGTTTAAATCGCATCAGAATGTTTGGTTCTTCTGTACGTTTGAAGTCCTTACTGGTCAGAAATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATATGCCTGGACCTGAACTCAGTTCCAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCTTAAAAGTAGCCTTCAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTAGTTTTCTGACACAAGAGAATGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGTGTGCTTGGAGTTGCGAATCTCACCAGATGATGCATGTGTGCTGTTGCAATTGGCGTGTTTTTTGGATGCATCTCCTCGCTTGCAGAAGTTAGTTTTAAAGGTATGCCGTCTTTTAGTCTCTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

695

Amino Acids

77.79

Weight (kDa)

5.13

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	13 - 190	2.2e-34	tRNA synthetases class I (C) catalytic domain
LRR_At1g61320_AtMIF1	PF23622	507 - 688	2.6e-12	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1199
Acc36I	ACCTGC	1 cut(s)	1199
AccB7I	CCANNNNNTGG	1 cut(s)	1534
AccII	CGCG	1 cut(s)	1434
AciI	CCGC	2 cut(s)	1172, 1507
AclWI	GGATC	1 cut(s)	1469
AcoI	YGGCCR	1 cut(s)	290
AcsI	RAATTY	4 cut(s)	180, 384, 1207, 1826
AcuI	CTGAAG	2 cut(s)	965, 1301
AfaI	GTAC	6 cut(s)	260, 658, 1027, 1101, 1337, 1662
AfiI	CCNNNNNNNGG	3 cut(s)	29, 1534, 1813
AgsI	TTSAA	7 cut(s)	770, 848, 963, 1544, 1601, 1669, 1846
AjiI	CACGTC	1 cut(s)	531
AjnI	CCWGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 1290, 1322
Alw21I	GWGCWC	4 cut(s)	178, 523, 778, 810
Alw26I	GTCTC	7 cut(s)	274, 461, 556, 590, 710, 1868, 2080
Alw44I	GTGCAC	2 cut(s)	174, 519
AlwI	GGATC	1 cut(s)	1469
AlwNI	CAGNNNCTG	1 cut(s)	1616
AoxI	GGCC	3 cut(s)	31, 290, 1252
ApaLI	GTGCAC	2 cut(s)	174, 519
ApeKI	GCWGC	8 cut(s)	351, 817, 820, 892, 922, 1071, 1386, 1849
ApoI	RAATTY	4 cut(s)	180, 384, 1207, 1826
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
AseI	ATTAAT	1 cut(s)	1178
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	4 cut(s)	272, 1215, 1253, 1771
AsuHPI	GGTGA	3 cut(s)	257, 1180, 1971
AvaII	GGWCC	3 cut(s)	272, 1215, 1771
BaeGI	GKGCMC	2 cut(s)	178, 523
BalI	TGGCCA	1 cut(s)	292
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	525, 1762
Bbv12I	GWGCWC	4 cut(s)	178, 523, 778, 810
BbvCI	CCTCAGC	1 cut(s)	1728
BbvI	GCAGC	8 cut(s)	363, 829, 832, 879, 934, 1058, 1398, 1861
BccI	CCATC	3 cut(s)	110, 164, 213
BceAI	ACGGC	2 cut(s)	119, 2049
BciT130I	CCWGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
BciVI	GTATCC	1 cut(s)	1125
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	7 cut(s)	274, 461, 556, 590, 710, 1868, 2080
BfaI	CTAG	1 cut(s)	1793
BfmI	CTRYAG	2 cut(s)	165, 675
BfuAI	ACCTGC	1 cut(s)	1199
BfuI	GTATCC	1 cut(s)	1125
BglII	AGATCT	1 cut(s)	1713
BisI	GCNGC	9 cut(s)	352, 818, 821, 893, 923, 1072, 1173, 1387, 1850
BlsI	GCNGC	9 cut(s)	353, 819, 822, 894, 924, 1073, 1174, 1388, 1851
Bme1390I	CCNGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
Bme18I	GGWCC	3 cut(s)	272, 1215, 1771
BmgBI	CACGTC	1 cut(s)	531
BmgT120I	GGNCC	4 cut(s)	272, 1215, 1253, 1771
BmiI	GGNNCC	2 cut(s)	273, 1255
BmrFI	CCNGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
BpiI	GAAGAC	2 cut(s)	525, 1762
Bpu10I	CCTNAGC	1 cut(s)	1728
BpuEI	CTTGAG	3 cut(s)	173, 794, 1721
BsaAI	YACGTR	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	5 cut(s)	266, 275, 284, 492, 1807
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 1534, 1813
Bse1I	ACTGG	2 cut(s)	1621, 1683
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
BseDI	CCNNGG	5 cut(s)	266, 275, 284, 492, 1807
BseGI	GGATG	6 cut(s)	205, 487, 1045, 1174, 1822, 2029
BseLI	CCNNNNNNNGG	3 cut(s)	29, 1534, 1813
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	5 cut(s)	926, 1173, 1742, 1794, 1955
BseNI	ACTGG	2 cut(s)	1621, 1683
BseRI	GAGGAG	4 cut(s)	306, 654, 1145, 2022
BseSI	GKGCMC	2 cut(s)	178, 523
BseXI	GCAGC	8 cut(s)	363, 829, 832, 879, 934, 1058, 1398, 1861
BseYI	CCCAGC	1 cut(s)	1311
BsgI	GTGCAG	1 cut(s)	1057
Bsh1236I	CGCG	1 cut(s)	1434
BshFI	GGCC	3 cut(s)	33, 292, 1254
BsiHKAI	GWGCWC	4 cut(s)	178, 523, 778, 810
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	4 cut(s)	285, 1357, 1507, 1789
BslI	CCNNNNNNNGG	3 cut(s)	29, 1534, 1813
BsmAI	GTCTC	7 cut(s)	274, 461, 556, 590, 710, 1868, 2080
BsmFI	GGGAC	4 cut(s)	285, 1357, 1507, 1789
BsnI	GGCC	3 cut(s)	33, 292, 1254
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	4 cut(s)	178, 523, 778, 810
Bsp143I	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
BspACI	CCGC	2 cut(s)	1172, 1507
BspANI	GGCC	3 cut(s)	33, 292, 1254
BspCNI	CTCAG	5 cut(s)	925, 1172, 1741, 1793, 1954
BspFNI	CGCG	1 cut(s)	1434
BspLI	GGNNCC	2 cut(s)	273, 1255
BspMI	ACCTGC	1 cut(s)	1199
BspPI	GGATC	1 cut(s)	1469
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	1621, 1683
BssECI	CCNNGG	5 cut(s)	266, 275, 284, 492, 1807
BssMI	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	266, 1807
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
Bst4CI	ACNGT	5 cut(s)	550, 611, 853, 1025, 1104
Bst6I	CTCTTC	2 cut(s)	941, 1002
BstAPI	GCANNNNNTGC	2 cut(s)	305, 575
BstBAI	YACGTR	1 cut(s)	751
BstC8I	GCNNGC	8 cut(s)	301, 349, 523, 825, 1734, 1854, 1858, 2039
BstDEI	CTNAG	8 cut(s)	912, 1159, 1503, 1728, 1780, 1874, 1901, 1941
BstENI	CCTNNNNNAGG	1 cut(s)	1811
BstF5I	GGATG	6 cut(s)	205, 487, 1045, 1174, 1822, 2029
BstFNI	CGCG	1 cut(s)	1434
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	7 cut(s)	87, 148, 784, 1452, 1477, 1555, 1716
BstMAI	GTCTC	7 cut(s)	274, 461, 556, 590, 710, 1868, 2080
BstMBI	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 140, 199, 305, 575, 706, 814, 1395
BstNI	CCWGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
BstNSI	RCATGY	3 cut(s)	44, 303, 1995
BstSCI	CCNGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
BstSFI	CTRYAG	2 cut(s)	165, 675
BstSLI	GKGCMC	2 cut(s)	178, 523
BstUI	CGCG	1 cut(s)	1434
BstV1I	GCAGC	8 cut(s)	363, 829, 832, 879, 934, 1058, 1398, 1861
BstV2I	GAAGAC	2 cut(s)	525, 1762
BstX2I	RGATCY	1 cut(s)	1713
BstYI	RGATCY	1 cut(s)	1713
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	3 cut(s)	33, 292, 1254
BtgZI	GCGATG	1 cut(s)	1449
BtrI	CACGTC	1 cut(s)	531
BtsCI	GGATG	6 cut(s)	205, 487, 1045, 1174, 1822, 2029
BtsI	GCAGTG	2 cut(s)	310, 361
BtsIMutI	CAGTG	5 cut(s)	310, 361, 858, 941, 1617
BveI	ACCTGC	1 cut(s)	1199
Cac8I	GCNNGC	8 cut(s)	301, 349, 523, 825, 1734, 1854, 1858, 2039
CaiI	CAGNNNCTG	1 cut(s)	1616
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	4 cut(s)	272, 1215, 1253, 1771
Csp6I	GTAC	6 cut(s)	259, 657, 1026, 1100, 1336, 1661
CviAII	CATG	6 cut(s)	41, 300, 344, 580, 1200, 1992
CviQI	GTAC	6 cut(s)	259, 657, 1026, 1100, 1336, 1661
DdeI	CTNAG	8 cut(s)	912, 1159, 1503, 1728, 1780, 1874, 1901, 1941
DpnI	GATC	7 cut(s)	86, 147, 783, 1451, 1476, 1554, 1715
DpnII	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
DraI	TTTAAA	2 cut(s)	1632, 2055
EaeI	YGGCCR	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	941, 1002
EarI	CTCTTC	2 cut(s)	941, 1002
Eco130I	CCWWGG	2 cut(s)	266, 1807
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	2 cut(s)	6, 340
Eco47I	GGWCC	3 cut(s)	272, 1215, 1771
Eco57I	CTGAAG	2 cut(s)	965, 1301
EcoNI	CCTNNNNNAGG	1 cut(s)	1811
EcoO109I	RGGNCCY	2 cut(s)	272, 1253
EcoRI	GAATTC	1 cut(s)	1826
EcoRII	CCWGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
EcoRV	GATATC	2 cut(s)	6, 340
EcoT14I	CCWWGG	2 cut(s)	266, 1807
EcoT22I	ATGCAT	2 cut(s)	1993, 2029
ErhI	CCWWGG	2 cut(s)	266, 1807
FaeI	CATG	6 cut(s)	44, 303, 347, 583, 1203, 1995
FalI	AAGNNNNNCTT	6 cut(s)	762, 794, 782, 814, 1791, 1823
FaqI	GGGAC	4 cut(s)	285, 1357, 1507, 1789
FatI	CATG	6 cut(s)	40, 299, 343, 579, 1199, 1991
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	9 cut(s)	352, 818, 821, 893, 923, 1072, 1173, 1387, 1850
FokI	GGATG	6 cut(s)	192, 474, 1052, 1181, 1829, 2036
Fsp4HI	GCNGC	9 cut(s)	352, 818, 821, 893, 923, 1072, 1173, 1387, 1850
FspBI	CTAG	1 cut(s)	1793
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	9 cut(s)	352, 818, 821, 893, 923, 1072, 1173, 1387, 1850
GsaI	CCCAGC	1 cut(s)	1315
HaeIII	GGCC	3 cut(s)	33, 292, 1254
HapII	CCGG	1 cut(s)	636
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	6 cut(s)	44, 303, 347, 583, 1203, 1995
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	1243
HindII	GTYRAC	1 cut(s)	1243
HindIII	AAGCTT	2 cut(s)	12, 1349
HinfI	GANTC	7 cut(s)	313, 449, 598, 718, 1520, 1696, 1974
HpaI	GTTAAC	1 cut(s)	1243
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	3 cut(s)	257, 1180, 1971
Hpy166II	GTNNAC	6 cut(s)	176, 521, 546, 842, 1215, 1243
Hpy188III	TCNNGA	6 cut(s)	56, 560, 779, 1427, 1700, 1889
Hpy8I	GTNNAC	6 cut(s)	176, 521, 546, 842, 1215, 1243
Hpy99I	CGWCG	1 cut(s)	1108
HpyAV	CCTTC	5 cut(s)	28, 232, 911, 1488, 1852
HpyCH4III	ACNGT	5 cut(s)	550, 611, 853, 1025, 1104
HpyCH4IV	ACGT	3 cut(s)	530, 750, 1663
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 140, 199, 305, 575, 706, 814, 1395
HpyF3I	CTNAG	8 cut(s)	912, 1159, 1503, 1728, 1780, 1874, 1901, 1941
HpySE526I	ACGT	3 cut(s)	530, 750, 1663
Hsp92II	CATG	6 cut(s)	44, 303, 347, 583, 1203, 1995
HspAI	GCGC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	1243
Kzo9I	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
LmnI	GCTCC	3 cut(s)	397, 641, 814
Lsp1109I	GCAGC	8 cut(s)	363, 829, 832, 879, 934, 1058, 1398, 1861
MaeI	CTAG	1 cut(s)	1793
MaeII	ACGT	3 cut(s)	530, 750, 1663
MaeIII	GTNAC	6 cut(s)	356, 421, 664, 1149, 1612, 1944
MalI	GATC	7 cut(s)	86, 147, 783, 1451, 1476, 1554, 1715
MboI	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
MfeI	CAATTG	2 cut(s)	294, 2006
MflI	RGATCY	1 cut(s)	1713
MhlI	GDGCHC	4 cut(s)	178, 523, 778, 810
MlsI	TGGCCA	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	4 cut(s)	307, 592, 712, 1529
MmeI	TCCRAC	4 cut(s)	135, 449, 1066, 1673
Mox20I	TGGCCA	1 cut(s)	292
Mph1103I	ATGCAT	2 cut(s)	1993, 2029
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	9 cut(s)	515, 800, 864, 1178, 1242, 1440, 1631, 1832, 2054
MslI	CAYNNNNRTG	1 cut(s)	1643
Msp20I	TGGCCA	1 cut(s)	292
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
MunI	CAATTG	2 cut(s)	294, 2006
MvaI	CCWGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
MvnI	CGCG	1 cut(s)	1434
MwoI	GCNNNNNNNGC	8 cut(s)	131, 140, 199, 305, 575, 706, 814, 1395
NdeII	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
NlaIII	CATG	6 cut(s)	44, 303, 347, 583, 1203, 1995
NlaIV	GGNNCC	2 cut(s)	273, 1255
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	4 cut(s)	356, 421, 1149, 1612
NsiI	ATGCAT	2 cut(s)	1993, 2029
NspI	RCATGY	3 cut(s)	44, 303, 1995
PaeI	GCATGC	1 cut(s)	303
PaqCI	CACCTGC	1 cut(s)	1199
PfeI	GAWTC	3 cut(s)	449, 1696, 1974
PflMI	CCANNNNNTGG	1 cut(s)	1534
PfoI	TCCNGGA	1 cut(s)	873
PkrI	GCNGC	9 cut(s)	353, 819, 822, 894, 924, 1073, 1174, 1388, 1851
PleI	GAGTC	4 cut(s)	307, 592, 712, 1528
PpsI	GAGTC	4 cut(s)	307, 592, 712, 1528
Ppu21I	YACGTR	1 cut(s)	751
PpuMI	RGGWCCY	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	1178
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
PspFI	CCCAGC	1 cut(s)	1311
PspGI	CCWGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
PspN4I	GGNNCC	2 cut(s)	273, 1255
PspPI	GGNCC	4 cut(s)	272, 1215, 1253, 1771
PspPPI	RGGWCCY	1 cut(s)	272
PsrI	GAACNNNNNNTAC	2 cut(s)	51, 83
PstNI	CAGNNNCTG	1 cut(s)	1616
PsuI	RGATCY	1 cut(s)	1713
RsaI	GTAC	6 cut(s)	260, 658, 1027, 1101, 1337, 1662
RsaNI	GTAC	6 cut(s)	259, 657, 1026, 1100, 1336, 1661
RseI	CAYNNNNRTG	1 cut(s)	1643
SaqAI	TTAA	9 cut(s)	515, 800, 864, 1178, 1242, 1440, 1631, 1832, 2054
SatI	GCNGC	9 cut(s)	352, 818, 821, 893, 923, 1072, 1173, 1387, 1850
Sau3AI	GATC	7 cut(s)	84, 145, 781, 1449, 1474, 1552, 1713
Sau96I	GGNCC	4 cut(s)	272, 1215, 1253, 1771
SchI	GAGTC	4 cut(s)	307, 592, 712, 1529
ScrFI	CCNGG	8 cut(s)	110, 276, 285, 494, 875, 1004, 1769, 1823
SduI	GDGCHC	4 cut(s)	178, 523, 778, 810
SfcI	CTRYAG	2 cut(s)	165, 675
SinI	GGWCC	3 cut(s)	272, 1215, 1771
SmiMI	CAYNNNNRTG	1 cut(s)	1643
SmlI	CTYRAG	3 cut(s)	188, 809, 1700
SmoI	CTYRAG	3 cut(s)	188, 809, 1700
SphI	GCATGC	1 cut(s)	303
SsiI	CCGC	2 cut(s)	1172, 1507
SspMI	CTAG	1 cut(s)	1793
StyD4I	CCNGG	8 cut(s)	108, 274, 283, 492, 873, 1002, 1767, 1821
StyI	CCWWGG	2 cut(s)	266, 1807
TaaI	ACNGT	5 cut(s)	550, 611, 853, 1025, 1104
TaiI	ACGT	3 cut(s)	533, 753, 1666
TaqI	TCGA	5 cut(s)	330, 1106, 1374, 1428, 1591
TatI	WGTACW	3 cut(s)	656, 1025, 1335
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	3 cut(s)	449, 1696, 1974
Tru1I	TTAA	9 cut(s)	515, 800, 864, 1178, 1242, 1440, 1631, 1832, 2054
Tru9I	TTAA	9 cut(s)	515, 800, 864, 1178, 1242, 1440, 1631, 1832, 2054
TscAI	CASTG	5 cut(s)	310, 361, 858, 948, 1617
TseFI	GTSAC	4 cut(s)	356, 421, 1149, 1612
TseI	GCWGC	8 cut(s)	351, 817, 820, 892, 922, 1071, 1386, 1849
Tsp45I	GTSAC	4 cut(s)	356, 421, 1149, 1612
TspDTI	ATGAA	3 cut(s)	770, 824, 2073
TspRI	CASTG	5 cut(s)	310, 361, 858, 948, 1617
Van91I	CCANNNNNTGG	1 cut(s)	1534
VneI	GTGCAC	2 cut(s)	174, 519
VpaK11BI	GGWCC	3 cut(s)	272, 1215, 1771
VspI	ATTAAT	1 cut(s)	1178
XagI	CCTNNNNNAGG	1 cut(s)	1811
XapI	RAATTY	4 cut(s)	180, 384, 1207, 1826
XceI	RCATGY	3 cut(s)	44, 303, 1995
XspI	CTAG	1 cut(s)	1793
Zsp2I	ATGCAT	2 cut(s)	1993, 2029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.