Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Reverse (-)

10115821 .. 10128476

Gene Structure 12656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

ATGGACCTGCATCAGCTCAACGAAAACGAAGCCCAAGGATCCATCGACGAGCTCAACGAAGGAGGCGGTGGAAAAGGCGATCACTTCGTCTCAGGCGAACCCAACGAAGCAGGCGGAGGACAAGGCGGTCACTTCGGCTCCGGCGAAATTATTAGTCAAGAAAATATGCTTGAAGAAGATTCGTCAAGTTCAACTACTCATCGCTGCCACAAAATCATTAATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCCCGTGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTAATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTCGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCTGCACATCTAATGTCGGAAAGGAAACAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATACTTGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACCACACAGGCCCCTCTGCCAACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGCTGGGTCAGAGATGTTCTAAAGAAGTACAGAGGGACGAAGCTTGATAAGTTCCATATCTTCTTCGATTTGGACAGCAGCTATACAAGCGAAATTGATGATTGGGTAGAGTTTGCTCTCGAACGCGATGTTAAAGCGTTGATCTTGGAAATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCCTTTACTAAGCGGATTACGGGTGAGTCCCTCCAAGTATTGGTGCTTGAAAATGTTGATCTGAATGGAGAGGTTTTTCAGCATATATGTCATTTTCGAGGACTTGAACAACTATCAGTGACTGGTGCATCTGGTTTAAATCGCATCAGAATGTTTGGTTCTTCTGTACGTTTGAAGTCCTTAGTGGTCAGAAATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATAAGCCTGGACCTGAACTCAGTTCCAAATCTACTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCTTAAAAGTAGCCTTCAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTAGTTTTCTGACACAAGAGAATGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGTGTGCTTGGAGTTGCGAATCTCACCAGATGATGCATGTGTGCTGTTGCAATTGGCGTGTTTTTTGGATGCATCTCCTCGCTTGCAGAAGTTAGTTTTAAAGTTTGACTTTCTAGGGTCGGGGATAAATTTGTGGAAAGCCGAGAGCCATCCGCACAACAACTTAAAAGGACCTAGTTGCTCCAGGGGCTCCAGTCGATTCGCAAAGCCGAGTTTTCAGATTGTGCTGTTGCCCTCAAAGAGAGAGTCTTTAACTATGGAGATGGACTCACTTGAACGGCTGAGAAGCTTCATGATTGCGTTCTCAACTGTTCGAAGACATCATCTTAGTGACAATACTGATGAAGATCTTCATGCATCCCAAGTTGCCGAAGAGACTCACAAACAGCACCTCATGGCGCTAGATGTTATAAAGTTAGCAGAGCTTGAGTACTTGGAGTTGCGAATCGAAGCCGATGATGCATGTGTTCTGTTGCAGTTGGCGTATTTTTTGGATGCATCTCCTCGCTTGCAAAAGTTATTGATTAAGGGGGACATTCTGGGGTCGGAGGTAAAGTTGTTGAAAGCTGAGAGCCACCCGCATAACAACTTAAAGTTAGCTGAGGTGGTTGGATTTAATGATTGCCCAGCAGCTATTGATAGTCGCATATATATTGGAAAATACTGCTGTATATGCTGCAAAAGGTGGTCATCGTTACTGTGTTGCCATGGTGTGAGCTCCGAAGAGGAAGGAAACCCGATGAATTTATTAGTAAGGAACAAGAAGGAAGGCGGCACGCGATGGCCCTTAGTAGAAGTACGCCAAAATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

971

Amino Acids

108.46

Weight (kDa)

5.22

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	59 - 223	2e-31	tRNA synthetases class I (C) catalytic domain
LRR_At1g61320_AtMIF1	PF23622	556 - 736	2.1e-11	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2513
AarI	CACCTGC	1 cut(s)	1346
AasI	GACNNNNNNGTC	1 cut(s)	126
Acc36I	ACCTGC	2 cut(s)	15, 1346
AccB7I	CCANNNNNTGG	1 cut(s)	1681
AccII	CGCG	2 cut(s)	1581, 2881
AciI	CCGC	8 cut(s)	66, 114, 126, 1319, 1654, 2255, 2681, 2874
AclWI	GGATC	3 cut(s)	33, 46, 1616
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	6 cut(s)	396, 600, 1354, 1973, 2230, 2845
AcuI	CTGAAG	2 cut(s)	1112, 1448
AfaI	GTAC	8 cut(s)	476, 805, 1174, 1248, 1484, 1809, 2534, 2901
AfiI	CCNNNNNNNGG	3 cut(s)	249, 1681, 1960
AjnI	CCWGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
AjuI	GAANNNNNNNTTGG	4 cut(s)	222, 254, 1437, 1469
Alw21I	GWGCWC	5 cut(s)	54, 394, 925, 957, 2822
Alw26I	GTCTC	7 cut(s)	94, 490, 677, 737, 857, 2015, 2471
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	33, 46, 1616
AlwNI	CAGNNNCTG	1 cut(s)	1763
AoxI	GGCC	4 cut(s)	251, 506, 1399, 2885
ApaLI	GTGCAC	1 cut(s)	390
ApoI	RAATTY	6 cut(s)	396, 600, 1354, 1973, 2230, 2845
ArsI	GACNNNNNNTTYG	4 cut(s)	865, 897, 2333, 2365
AseI	ATTAAT	2 cut(s)	219, 1325
Asp700I	GAANNNNTTC	1 cut(s)	2451
AspLEI	GCGC	1 cut(s)	2503
AspS9I	GGNCC	8 cut(s)	4, 252, 488, 1362, 1400, 1918, 2273, 2886
AsuHPI	GGTGA	4 cut(s)	473, 1327, 1676, 2118
AsuII	TTCGAA	1 cut(s)	2416
AvaII	GGWCC	5 cut(s)	4, 488, 1362, 1918, 2273
BaeGI	GKGCMC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	38
BanII	GRGCYC	3 cut(s)	54, 2294, 2822
BbsI	GAAGAC	2 cut(s)	1909, 2425
Bbv12I	GWGCWC	5 cut(s)	54, 394, 925, 957, 2822
BbvCI	CCTCAGC	2 cut(s)	1875, 2703
BccI	CCATC	7 cut(s)	50, 326, 380, 429, 2259, 2359, 2877
BceAI	ACGGC	2 cut(s)	335, 2396
BciT130I	CCWGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
BciVI	GTATCC	1 cut(s)	1272
BcoDI	GTCTC	7 cut(s)	94, 490, 677, 737, 857, 2015, 2471
BfaI	CTAG	4 cut(s)	2216, 2277, 2504, 2914
BfmI	CTRYAG	2 cut(s)	381, 822
BfoI	RGCGCY	1 cut(s)	2504
BfuAI	ACCTGC	2 cut(s)	15, 1346
BfuI	GTATCC	1 cut(s)	1272
BglII	AGATCT	2 cut(s)	1860, 2449
BmcAI	AGTACT	1 cut(s)	2534
Bme1390I	CCNGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
Bme18I	GGWCC	5 cut(s)	4, 488, 1362, 1918, 2273
BmgT120I	GGNCC	8 cut(s)	4, 252, 488, 1362, 1400, 1918, 2273, 2886
BmiI	GGNNCC	6 cut(s)	40, 139, 254, 489, 1402, 2293
BmrFI	CCNGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
BpiI	GAAGAC	2 cut(s)	1909, 2425
BplI	GAGNNNNNCTC	2 cut(s)	2354, 2386
BpmI	CTGGAG	2 cut(s)	2269, 2278
Bpu10I	CCTNAGC	2 cut(s)	1875, 2703
Bpu14I	TTCGAA	1 cut(s)	2416
BpuEI	CTTGAG	4 cut(s)	389, 941, 1868, 2549
BsaBI	GATNNNNATC	1 cut(s)	2448
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1954, 2286, 2809
BsaWI	WCCGGW	1 cut(s)	782
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 2642, 2672
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 1681, 1960
Bse1I	ACTGG	2 cut(s)	1768, 2295
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	2448
BseBI	CCWGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
BseDI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1954, 2286, 2809
BseGI	GGATG	9 cut(s)	421, 703, 1192, 1321, 1969, 2176, 2251, 2459, 2602
BseJI	GATNNNNATC	1 cut(s)	2448
BseLI	CCNNNNNNNGG	3 cut(s)	249, 1681, 1960
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	9 cut(s)	105, 1073, 1320, 1889, 1941, 2102, 2375, 2661, 2694
BseNI	ACTGG	2 cut(s)	1768, 2295
BseRI	GAGGAG	5 cut(s)	522, 801, 1292, 2169, 2595
BseSI	GKGCMC	1 cut(s)	394
BseYI	CCCAGC	2 cut(s)	1458, 2728
BsgI	GTGCAG	1 cut(s)	1204
Bsh1236I	CGCG	2 cut(s)	1581, 2881
BshFI	GGCC	4 cut(s)	253, 508, 1401, 2887
BsiHKAI	GWGCWC	5 cut(s)	54, 394, 925, 957, 2822
BsiSI	CCGG	2 cut(s)	141, 783
BslFI	GGGAC	5 cut(s)	501, 1504, 1654, 1936, 2648
BslI	CCNNNNNNNGG	3 cut(s)	249, 1681, 1960
BsmAI	GTCTC	7 cut(s)	94, 490, 677, 737, 857, 2015, 2471
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	5 cut(s)	501, 1504, 1654, 1936, 2648
BsnI	GGCC	4 cut(s)	253, 508, 1401, 2887
Bso31I	GGTCTC	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	2416
Bsp1286I	GDGCHC	6 cut(s)	54, 394, 925, 957, 2294, 2822
Bsp143I	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
Bsp19I	CCATGG	1 cut(s)	2809
BspACI	CCGC	8 cut(s)	66, 114, 126, 1319, 1654, 2255, 2681, 2874
BspANI	GGCC	4 cut(s)	253, 508, 1401, 2887
BspCNI	CTCAG	9 cut(s)	104, 1072, 1319, 1888, 1940, 2101, 2376, 2662, 2695
BspFNI	CGCG	2 cut(s)	1581, 2881
BspHI	TCATGA	1 cut(s)	2394
BspLI	GGNNCC	6 cut(s)	40, 139, 254, 489, 1402, 2293
BspMI	ACCTGC	2 cut(s)	15, 1346
BspPI	GGATC	3 cut(s)	33, 46, 1616
BspT104I	TTCGAA	1 cut(s)	2416
BspTNI	GGTCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	1768, 2295
BssECI	CCNNGG	8 cut(s)	34, 482, 491, 500, 708, 1954, 2286, 2809
BssMI	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
BssT1I	CCWWGG	4 cut(s)	34, 482, 1954, 2809
Bst2UI	CCWGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
Bst4CI	ACNGT	7 cut(s)	758, 1000, 1172, 1246, 1251, 2413, 2802
Bst6I	CTCTTC	4 cut(s)	1088, 1149, 2469, 2820
BstAPI	GCANNNNNTGC	2 cut(s)	521, 722
BstBI	TTCGAA	1 cut(s)	2416
BstDSI	CCRYGG	1 cut(s)	2809
BstENI	CCTNNNNNAGG	1 cut(s)	1958
BstF5I	GGATG	9 cut(s)	421, 703, 1192, 1321, 1969, 2176, 2251, 2459, 2602
BstFNI	CGCG	2 cut(s)	1581, 2881
BstH2I	RGCGCY	1 cut(s)	2504
BstHHI	GCGC	1 cut(s)	2503
BstKTI	GATC	9 cut(s)	41, 82, 303, 931, 1599, 1624, 1702, 1863, 2452
BstMAI	GTCTC	7 cut(s)	94, 490, 677, 737, 857, 2015, 2471
BstMBI	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
BstNI	CCWGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
BstNSI	RCATGY	3 cut(s)	519, 2142, 2568
BstSCI	CCNGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
BstSFI	CTRYAG	2 cut(s)	381, 822
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	2 cut(s)	1581, 2881
BstV2I	GAAGAC	2 cut(s)	1909, 2425
BstX2I	RGATCY	3 cut(s)	38, 1860, 2449
BstYI	RGATCY	3 cut(s)	38, 1860, 2449
BsuI	GTATCC	1 cut(s)	1272
BsuRI	GGCC	4 cut(s)	253, 508, 1401, 2887
BtgI	CCRYGG	1 cut(s)	2809
BtgZI	GCGATG	3 cut(s)	185, 1596, 2896
BtsCI	GGATG	9 cut(s)	421, 703, 1192, 1321, 1969, 2176, 2251, 2459, 2602
BtsI	GCAGTG	2 cut(s)	526, 577
BtsIMutI	CAGTG	5 cut(s)	526, 577, 1005, 1088, 1764
BveI	ACCTGC	2 cut(s)	15, 1346
CaiI	CAGNNNCTG	1 cut(s)	1763
CciI	TCATGA	1 cut(s)	2394
CfoI	GCGC	1 cut(s)	2503
Cfr13I	GGNCC	8 cut(s)	4, 252, 488, 1362, 1400, 1918, 2273, 2886
Csp6I	GTAC	8 cut(s)	475, 804, 1173, 1247, 1483, 1808, 2533, 2900
CviQI	GTAC	8 cut(s)	475, 804, 1173, 1247, 1483, 1808, 2533, 2900
DpnI	GATC	9 cut(s)	40, 81, 302, 930, 1598, 1623, 1701, 1862, 2451
DpnII	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
DraI	TTTAAA	2 cut(s)	1779, 2202
DrdI	GACNNNNNNGTC	1 cut(s)	126
DseDI	GACNNNNNNGTC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	4 cut(s)	1088, 1149, 2469, 2820
EarI	CTCTTC	4 cut(s)	1088, 1149, 2469, 2820
EciI	GGCGGA	1 cut(s)	129
Ecl136II	GAGCTC	2 cut(s)	52, 2820
Eco130I	CCWWGG	4 cut(s)	34, 482, 1954, 2809
Eco24I	GRGCYC	3 cut(s)	54, 2294, 2822
Eco31I	GGTCTC	1 cut(s)	490
Eco32I	GATATC	2 cut(s)	226, 556
Eco47I	GGWCC	5 cut(s)	4, 488, 1362, 1918, 2273
Eco53kI	GAGCTC	2 cut(s)	52, 2820
Eco57I	CTGAAG	2 cut(s)	1112, 1448
EcoICRI	GAGCTC	2 cut(s)	52, 2820
EcoNI	CCTNNNNNAGG	1 cut(s)	1958
EcoO109I	RGGNCCY	3 cut(s)	488, 1400, 2273
EcoRI	GAATTC	1 cut(s)	1973
EcoRII	CCWGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
EcoRV	GATATC	2 cut(s)	226, 556
EcoT14I	CCWWGG	4 cut(s)	34, 482, 1954, 2809
EcoT22I	ATGCAT	5 cut(s)	2140, 2176, 2461, 2566, 2602
EcoT38I	GRGCYC	3 cut(s)	54, 2294, 2822
ErhI	CCWWGG	4 cut(s)	34, 482, 1954, 2809
Esp3I	CGTCTC	1 cut(s)	94
FalI	AAGNNNNNCTT	8 cut(s)	909, 941, 929, 961, 1938, 1970, 2195, 2227
FaqI	GGGAC	5 cut(s)	501, 1504, 1654, 1936, 2648
FauI	CCCGC	1 cut(s)	2688
FokI	GGATG	9 cut(s)	408, 690, 1199, 1328, 1976, 2183, 2238, 2446, 2609
FriOI	GRGCYC	3 cut(s)	54, 2294, 2822
FspBI	CTAG	4 cut(s)	2216, 2277, 2504, 2914
GlaI	GCGC	1 cut(s)	2502
GsaI	CCCAGC	2 cut(s)	1462, 2732
GsuI	CTGGAG	2 cut(s)	2269, 2278
HaeII	RGCGCY	1 cut(s)	2504
HaeIII	GGCC	4 cut(s)	253, 508, 1401, 2887
HapII	CCGG	2 cut(s)	141, 783
HhaI	GCGC	1 cut(s)	2503
Hin6I	GCGC	1 cut(s)	2501
HinP1I	GCGC	1 cut(s)	2501
HincII	GTYRAC	1 cut(s)	1390
HindII	GTYRAC	1 cut(s)	1390
HindIII	AAGCTT	3 cut(s)	232, 1496, 2389
HpaI	GTTAAC	1 cut(s)	1390
HpaII	CCGG	2 cut(s)	141, 783
HphI	GGTGA	4 cut(s)	473, 1327, 1676, 2118
Hpy166II	GTNNAC	4 cut(s)	392, 989, 1362, 1390
Hpy188III	TCNNGA	7 cut(s)	158, 272, 926, 1574, 1847, 2036, 2395
Hpy8I	GTNNAC	4 cut(s)	392, 989, 1362, 1390
Hpy99I	CGWCG	2 cut(s)	50, 1255
HpyAV	CCTTC	9 cut(s)	53, 248, 448, 1058, 1635, 1999, 2825, 2860, 2864
HpyCH4III	ACNGT	7 cut(s)	758, 1000, 1172, 1246, 1251, 2413, 2802
HpyCH4IV	ACGT	1 cut(s)	1810
HpySE526I	ACGT	1 cut(s)	1810
HspAI	GCGC	1 cut(s)	2501
KspAI	GTTAAC	1 cut(s)	1390
Kzo9I	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
LmnI	GCTCC	7 cut(s)	143, 613, 788, 961, 2288, 2297, 2825
MaeI	CTAG	4 cut(s)	2216, 2277, 2504, 2914
MaeII	ACGT	1 cut(s)	1810
MaeIII	GTNAC	9 cut(s)	128, 572, 637, 811, 1296, 1759, 2091, 2432, 2796
MalI	GATC	9 cut(s)	40, 81, 302, 930, 1598, 1623, 1701, 1862, 2451
MboI	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
MfeI	CAATTG	2 cut(s)	510, 2153
MflI	RGATCY	3 cut(s)	38, 1860, 2449
MhlI	GDGCHC	6 cut(s)	54, 394, 925, 957, 2294, 2822
MlsI	TGGCCA	1 cut(s)	508
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	7 cut(s)	523, 739, 859, 1676, 2357, 2363, 2473
MmeI	TCCRAC	6 cut(s)	351, 665, 1213, 1820, 2628, 2692
Mox20I	TGGCCA	1 cut(s)	508
Mph1103I	ATGCAT	5 cut(s)	2140, 2176, 2461, 2566, 2602
MroXI	GAANNNNTTC	1 cut(s)	2451
MscI	TGGCCA	1 cut(s)	508
MslI	CAYNNNNRTG	2 cut(s)	1790, 2430
Msp20I	TGGCCA	1 cut(s)	508
MspI	CCGG	2 cut(s)	141, 783
MspR9I	CCNGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
MunI	CAATTG	2 cut(s)	510, 2153
MvaI	CCWGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
MvnI	CGCG	2 cut(s)	1581, 2881
NcoI	CCATGG	1 cut(s)	2809
NdeII	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
NlaIV	GGNNCC	6 cut(s)	40, 139, 254, 489, 1402, 2293
NmeAIII	GCCGAG	3 cut(s)	229, 2269, 2337
NmuCI	GTSAC	6 cut(s)	128, 572, 637, 1296, 1759, 2432
NsiI	ATGCAT	5 cut(s)	2140, 2176, 2461, 2566, 2602
NspI	RCATGY	3 cut(s)	519, 2142, 2568
NspV	TTCGAA	1 cut(s)	2416
PaeI	GCATGC	1 cut(s)	519
PagI	TCATGA	1 cut(s)	2394
PaqCI	CACCTGC	1 cut(s)	1346
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 93, 141
PdmI	GAANNNNTTC	1 cut(s)	2451
PfeI	GAWTC	6 cut(s)	179, 665, 1843, 2121, 2301, 2547
PflMI	CCANNNNNTGG	1 cut(s)	1681
PfoI	TCCNGGA	1 cut(s)	1020
PleI	GAGTC	7 cut(s)	523, 739, 859, 1675, 2356, 2363, 2473
PpsI	GAGTC	7 cut(s)	523, 739, 859, 1675, 2356, 2363, 2473
PpuMI	RGGWCCY	2 cut(s)	488, 2273
PshBI	ATTAAT	2 cut(s)	219, 1325
PsiI	TTATAA	1 cut(s)	2513
Psp124BI	GAGCTC	2 cut(s)	54, 2822
Psp5II	RGGWCCY	2 cut(s)	488, 2273
Psp6I	CCWGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
PspFI	CCCAGC	2 cut(s)	1458, 2728
PspGI	CCWGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
PspN4I	GGNNCC	6 cut(s)	40, 139, 254, 489, 1402, 2293
PspPI	GGNCC	8 cut(s)	4, 252, 488, 1362, 1400, 1918, 2273, 2886
PspPPI	RGGWCCY	2 cut(s)	488, 2273
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PstNI	CAGNNNCTG	1 cut(s)	1763
PsuI	RGATCY	3 cut(s)	38, 1860, 2449
RsaI	GTAC	8 cut(s)	476, 805, 1174, 1248, 1484, 1809, 2534, 2901
RsaNI	GTAC	8 cut(s)	475, 804, 1173, 1247, 1483, 1808, 2533, 2900
RseI	CAYNNNNRTG	2 cut(s)	1790, 2430
SacI	GAGCTC	2 cut(s)	54, 2822
Sau3AI	GATC	9 cut(s)	38, 79, 300, 928, 1596, 1621, 1699, 1860, 2449
Sau96I	GGNCC	8 cut(s)	4, 252, 488, 1362, 1400, 1918, 2273, 2886
ScaI	AGTACT	1 cut(s)	2534
SchI	GAGTC	7 cut(s)	523, 739, 859, 1676, 2357, 2363, 2473
ScrFI	CCNGG	9 cut(s)	326, 492, 501, 710, 1022, 1151, 1916, 1970, 2287
SduI	GDGCHC	6 cut(s)	54, 394, 925, 957, 2294, 2822
SfcI	CTRYAG	2 cut(s)	381, 822
SfuI	TTCGAA	1 cut(s)	2416
SinI	GGWCC	5 cut(s)	4, 488, 1362, 1918, 2273
SmiMI	CAYNNNNRTG	2 cut(s)	1790, 2430
SmlI	CTYRAG	4 cut(s)	404, 956, 1847, 2528
SmoI	CTYRAG	4 cut(s)	404, 956, 1847, 2528
SphI	GCATGC	1 cut(s)	519
SsiI	CCGC	8 cut(s)	66, 114, 126, 1319, 1654, 2255, 2681, 2874
SspMI	CTAG	4 cut(s)	2216, 2277, 2504, 2914
SstI	GAGCTC	2 cut(s)	54, 2822
StyD4I	CCNGG	9 cut(s)	324, 490, 499, 708, 1020, 1149, 1914, 1968, 2285
StyI	CCWWGG	4 cut(s)	34, 482, 1954, 2809
TaaI	ACNGT	7 cut(s)	758, 1000, 1172, 1246, 1251, 2413, 2802
TaiI	ACGT	1 cut(s)	1813
TatI	WGTACW	4 cut(s)	803, 1172, 1482, 2532
TauI	GCSGC	2 cut(s)	1322, 2877
TfiI	GAWTC	6 cut(s)	179, 665, 1843, 2121, 2301, 2547
TscAI	CASTG	5 cut(s)	526, 577, 1005, 1095, 1764
TseFI	GTSAC	6 cut(s)	128, 572, 637, 1296, 1759, 2432
Tsp45I	GTSAC	6 cut(s)	128, 572, 637, 1296, 1759, 2432
TspDTI	ATGAA	6 cut(s)	917, 971, 2383, 2444, 2460, 2858
TspRI	CASTG	5 cut(s)	526, 577, 1005, 1095, 1764
Van91I	CCANNNNNTGG	1 cut(s)	1681
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	5 cut(s)	4, 488, 1362, 1918, 2273
VspI	ATTAAT	2 cut(s)	219, 1325
XagI	CCTNNNNNAGG	1 cut(s)	1958
XapI	RAATTY	6 cut(s)	396, 600, 1354, 1973, 2230, 2845
XceI	RCATGY	3 cut(s)	519, 2142, 2568
XmnI	GAANNNNTTC	1 cut(s)	2451
XspI	CTAG	4 cut(s)	2216, 2277, 2504, 2914
ZrmI	AGTACT	1 cut(s)	2534
Zsp2I	ATGCAT	5 cut(s)	2140, 2176, 2461, 2566, 2602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.