Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035217.1

Orthogroup ID

OG0004554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1106

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035217.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 863 bp

gcccctctgccaaccttgacattggactgaagattagagagagggaaaagtatgttggctgggtcagagatgttctaaagaagtacagagggacgaagcttgataagttccatatcttcttcgatttggacagcagctatacaagcgaaattgatgattgggtagagtttgctctcgaacacgatgttaaagcattgatcttggaaatggtcagcccttttgatccttctcgtaataactattcctttactaagcggattacgggcgagtccctccaagtattggtgcttgaaaatgttgatctgaatggagaggtttttcagcatatatctcattttcgaggacttgaacaactatcagtgactcgtgcatctggtttaaatcgcatcagaatgtttggttcttctgtacgtttgaagtccttagtggtcagaaattgttggaatcttgagattattgagatctgtgatttacctcagcttgccttctttgagtttgagggaagacctatatgtctggacctgaactcagttccaaatctagtgaaagtgtccattggcgagtatgacctggaattcttaaaagtagccttcaagcagcttgcttgctgtctctgtcagctaagaactcttactctggataacacacttagttttctgacacaagagaaagttgtctttcctattcctcagttaccagagcttgtgtgcttggagttgcgaatctcaccagatgatgcatgtgctgttgcaattggcgtgttttttggatgcatctcctcgcttgcagaagttagttttaaaggtatgccgtcttttagtctctatttcataacggctgtgaacagcttctgcatatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

286

Amino Acids

32.52

Weight (kDa)

5.26

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364611 RchiOBHm_Chr1g0364621 RchiOBHm_Chr7g0191131 RchiOBHm_Chr7g0191141
rosa_multiflora	Rmu_sc0001080.1_g000001 Rmu_sc0030373.1_g000002 Rmu_sc0031056.1_g000001 Rmu_sc0035217.1_g000001 Rmu_ssc0000282.1_g000023
rosa_roxburghii	Rroxscaffold_3G00264010 Rroxscaffold_3G00264020
rosa_rugosa	Rorug06G0508600 Rorug06G0508600 Rorug06G0508600 Rorug06G0508700 Rorug06G0508800 Rorug06G0508900.1
rosa_samantha	Rh1AG146100 Rh1AG146200 Rh1AG325500 Rh1AG325600 Rh1CG137500 Rh1CG137700 Rh1DG152600 Rh1DG152900 Rh7AG116200 Rh7CG121100 Rh7CG121200 Rh7DG119500
rosa_wichuraiana	Rw7G010080 Rw7G010090 Rw7G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	85, 410
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	292, 349, 417, 594
AjnI	CCWGG	1 cut(s)	569
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	7 cut(s)	99, 137, 480, 600, 621, 702, 848
AluI	AGCT	7 cut(s)	99, 137, 480, 600, 621, 702, 848
Alw26I	GTCTC	2 cut(s)	616, 826
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	134, 597
ApoI	RAATTY	1 cut(s)	574
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	146, 609
BceAI	ACGGC	2 cut(s)	795, 851
BciT130I	CCWGG	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	616, 826
BfaI	CTAG	1 cut(s)	541
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	2 cut(s)	135, 598
BlsI	GCNGC	2 cut(s)	136, 599
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	571
BmsI	GCATC	5 cut(s)	379, 395, 726, 760, 782
BpiI	GAAGAC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	490, 542, 703
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	146, 609
BseYI	CCCAGC	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	105, 255
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	616, 826
BsmFI	GGGAC	2 cut(s)	105, 255
Bsp143I	GATC	4 cut(s)	197, 222, 300, 461
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	489, 541, 702
BspPI	GGATC	1 cut(s)	217
BssMI	GATC	4 cut(s)	197, 222, 300, 461
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	571
BstC8I	GCNNGC	4 cut(s)	482, 602, 606, 785
BstDEI	CTNAG	7 cut(s)	251, 423, 476, 528, 622, 649, 689
BstF5I	GGATG	1 cut(s)	775
BstKTI	GATC	4 cut(s)	200, 225, 303, 464
BstMAI	GTCTC	2 cut(s)	616, 826
BstMBI	GATC	4 cut(s)	197, 222, 300, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	146, 609
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	482, 602, 606, 785
CaiI	CAGNNNCTG	1 cut(s)	851
Cfr13I	GGNCC	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	84, 409
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	2 cut(s)	84, 409
DdeI	CTNAG	7 cut(s)	251, 423, 476, 528, 622, 649, 689
DpnI	GATC	4 cut(s)	199, 224, 302, 463
DpnII	GATC	4 cut(s)	197, 222, 300, 461
DraI	TTTAAA	2 cut(s)	380, 801
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	569
EcoT22I	ATGCAT	2 cut(s)	741, 775
FaeI	CATG	1 cut(s)	743
FaqI	GGGAC	2 cut(s)	105, 255
FatI	CATG	1 cut(s)	739
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	2 cut(s)	135, 598
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	2 cut(s)	135, 598
FspBI	CTAG	1 cut(s)	541
GluI	GCNGC	2 cut(s)	135, 598
GsaI	CCCAGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	4 cut(s)	268, 363, 444, 722
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	843
Hpy188I	TCNGA	5 cut(s)	67, 305, 391, 433, 659
Hpy188III	TCNNGA	4 cut(s)	175, 448, 517, 637
Hpy8I	GTNNAC	1 cut(s)	843
HpyAV	CCTTC	3 cut(s)	236, 495, 600
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	6 cut(s)	370, 739, 751, 773, 787, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	7 cut(s)	251, 423, 476, 528, 622, 649, 689
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	743
Kzo9I	GATC	4 cut(s)	197, 222, 300, 461
LpnPI	CCDG	9 cut(s)	45, 359, 502, 535, 556, 583, 622, 710, 743
Lsp1109I	GCAGC	2 cut(s)	146, 609
LweI	GCATC	5 cut(s)	379, 395, 726, 760, 782
MaeI	CTAG	1 cut(s)	541
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	360, 692
MalI	GATC	4 cut(s)	199, 224, 302, 463
MboI	GATC	4 cut(s)	197, 222, 300, 461
MboII	GAAGA	5 cut(s)	42, 108, 111, 395, 515
MfeI	CAATTG	1 cut(s)	752
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	4 cut(s)	149, 435, 574, 752
MlyI	GAGTC	2 cut(s)	277, 357
MmeI	TCCRAC	1 cut(s)	421
Mph1103I	ATGCAT	2 cut(s)	741, 775
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	5 cut(s)	188, 379, 580, 800, 861
MslI	CAYNNNNRTG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	571
MunI	CAATTG	1 cut(s)	752
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	4 cut(s)	197, 222, 300, 461
NlaIII	CATG	1 cut(s)	743
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	2 cut(s)	741, 775
NspI	RCATGY	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	444, 722
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	136, 599
PleI	GAGTC	2 cut(s)	276, 357
PpsI	GAGTC	2 cut(s)	276, 357
Psp6I	CCWGG	1 cut(s)	569
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	85, 410
RsaNI	GTAC	2 cut(s)	84, 409
RseI	CAYNNNNRTG	1 cut(s)	391
SaqAI	TTAA	5 cut(s)	188, 379, 580, 800, 861
SatI	GCNGC	2 cut(s)	135, 598
Sau3AI	GATC	4 cut(s)	197, 222, 300, 461
Sau96I	GGNCC	1 cut(s)	519
SchI	GAGTC	2 cut(s)	277, 357
ScrFI	CCNGG	1 cut(s)	571
SfaNI	GCATC	5 cut(s)	379, 395, 726, 760, 782
SinI	GGWCC	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	4 cut(s)	149, 435, 574, 752
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	569
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	122, 176, 339
TasI	AATT	4 cut(s)	149, 435, 574, 752
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	444, 722
Tru1I	TTAA	5 cut(s)	188, 379, 580, 800, 861
Tru9I	TTAA	5 cut(s)	188, 379, 580, 800, 861
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	134, 597
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	819
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	519
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	1 cut(s)	541
Zsp2I	ATGCAT	2 cut(s)	741, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.