Rroxscaffold_3G00264020

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004554
Physical Location & Seq
Forward (+)
57807099 .. 57807556
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264020.1

Sequence Viewer

Length: 366 bp
ATGGTCGGTTCTTCAGTACGTTTGAAGTCCTTAGTGGTCAGAGATTGCTGGAACCTCGAGATTATTGAGATCTGTGATCGACCTCAGCTTGCTTTCTTTCTGTATGAGGAAACACCTATATGCCTGGACCTGAATAGAGTTCGAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCCTTAAACTTGCCTTAAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAAAACTCTTACGCTAGATAACACACTTACTTTTCTGCCAGAAGAGAATGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGAGTACTTGGAGTTGCGAATCGAAGCCTATGATGCAGGTGTTCTGTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

121

Amino Acids

13.9

Weight (kDa)

4.46

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 2 cut(s) 18, 317
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 123, 177
AluBI AGCT 4 cut(s) 88, 208, 229, 310
AluI AGCT 4 cut(s) 88, 208, 229, 310
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 125, 179
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 149, 245
BfuAI ACCTGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 69
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 125, 179
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 2 cut(s) 125, 179
BmsI GCATC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 125, 179
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 98, 311
BseXI GCAGC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 69, 76
BspCNI CTCAG 2 cut(s) 97, 310
BspLI GGNNCC 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 69, 76
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 125, 179
Bst6I CTCTTC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 90, 210, 214
BstDEI CTNAG 3 cut(s) 31, 84, 297
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 72, 79
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 69, 76
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 2 cut(s) 125, 179
BstSCI CCNGG 2 cut(s) 123, 177
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 3 cut(s) 90, 210, 214
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 17, 316
CviJI RGCY 5 cut(s) 88, 208, 229, 310, 338
CviKI_1 RGCY 5 cut(s) 88, 208, 229, 310, 338
CviQI GTAC 2 cut(s) 17, 316
DdeI CTNAG 3 cut(s) 31, 84, 297
DpnI GATC 2 cut(s) 71, 78
DpnII GATC 2 cut(s) 69, 76
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 123, 177
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaiI YATR 4 cut(s) 105, 119, 121, 342
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 149, 245
GluI GCNGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 347, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 3 cut(s) 31, 84, 297
HpySE526I ACGT 1 cut(s) 19
Kzo9I GATC 2 cut(s) 69, 76
LpnPI CCDG 9 cut(s) 34, 110, 137, 143, 164, 191, 282, 318, 333
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 149, 245
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 300
MalI GATC 2 cut(s) 71, 78
MboI GATC 2 cut(s) 69, 76
MboII GAAGA 2 cut(s) 3, 284
MflI RGATCY 1 cut(s) 69
MluCI AATT 1 cut(s) 182
MnlI CCTC 5 cut(s) 65, 93, 100, 163, 306
MseI TTAA 2 cut(s) 189, 200
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 125, 179
MvaI CCWGG 2 cut(s) 125, 179
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeII GATC 2 cut(s) 69, 76
NlaIV GGNNCC 1 cut(s) 53
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 123, 177
PspGI CCWGG 2 cut(s) 123, 177
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 2 cut(s) 18, 317
RsaNI GTAC 2 cut(s) 17, 316
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 189, 200
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 69, 76
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 125, 179
SfaNI GCATC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 56, 311
SmoI CTYRAG 2 cut(s) 56, 311
Sse9I AATT 1 cut(s) 182
SspMI CTAG 2 cut(s) 149, 245
StyD4I CCNGG 2 cut(s) 123, 177
StyI CCWWGG 1 cut(s) 163
TaiI ACGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 57, 79, 142, 333
TasI AATT 1 cut(s) 182
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 2 cut(s) 189, 200
Tru9I TTAA 2 cut(s) 189, 200
TseI GCWGC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 149, 245
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.