Rh1AG146100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004554
Physical Location & Seq
Reverse (-)
27564512 .. 27569162
4651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG146100.1

Sequence Viewer

Length: 666 bp
ATGGTCGGTTTTTCAGTACGTTTGAAGTCCTTAGTGGTCAGAGATTGCTGGAACCTCGAGATTGTTGAGATCTGTGATCTACCTCAGCTTGCTTTCTTTCGGTATGAGGGAACACCTTTATGCCTGGACCTGAATAGAGTTCGAAATCTAGTGAAAGTGTCCCTTGGCGAGGATGACCTGGAATTCCTTAAACTTGCGTTAAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACGCTAGCTAACACACTTAATTTTCTGTTAGCAGAGCTTGAGTACTTGGAGTTGCGAATCGAAGCCGATGATGCATGTGTTCTGTTGCAGTTGGCGTATTTTTTGGATGCATCTCCTCGCTTGCAAAAGTTATTGATTAAGGGGGACATTCTGGGGTCAGAGGTAAAGTTGTTGAAAGCTGAGAGCCACCCGCATAACAACTTGAAGTTAGCTGAGGTTGTTGGATTTAATGATTGCCCAGCAGCTATTGATAGTCGCATATATATTGGAAAATACTGCTGTATATGCTGCAAAAGGTGGTCATCGTTACTGTGTTGCCATGGTGTGAGCTCCGAAGAGGAAGGAAACCCGATGAATTTATTAGTAAGGAACAAGAAGGAAGGCGGCACGCGATGGCCCTTAGTAGAAGTACGCCAAAATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

221

Amino Acids

25.04

Weight (kDa)

6.33

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 7 - 158 2.2e-10 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 631
AciI CCGC 2 cut(s) 431, 624
AcsI RAATTY 2 cut(s) 182, 595
AfaI GTAC 3 cut(s) 18, 284, 651
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 3 cut(s) 25, 415, 445
AjnI CCWGG 2 cut(s) 123, 177
AluBI AGCT 9 cut(s) 88, 208, 229, 248, 277, 419, 452, 485, 570
AluI AGCT 9 cut(s) 88, 208, 229, 248, 277, 419, 452, 485, 570
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 635
ApeKI GCWGC 3 cut(s) 205, 482, 528
ApoI RAATTY 2 cut(s) 182, 595
AspS9I GGNCC 2 cut(s) 127, 636
AsuII TTCGAA 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 572
BbvCI CCTCAGC 2 cut(s) 84, 453
BbvI GCAGC 3 cut(s) 217, 494, 515
BccI CCATC 1 cut(s) 627
BciT130I CCWGG 2 cut(s) 125, 179
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 149, 245, 664
BglII AGATCT 1 cut(s) 69
BisI GCNGC 4 cut(s) 206, 483, 529, 625
BlsI GCNGC 4 cut(s) 207, 484, 530, 626
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 125, 179
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 127, 636
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 2 cut(s) 125, 179
BmsI GCATC 3 cut(s) 301, 337, 359
BmtI GCTAGC 1 cut(s) 248
Bpu10I CCTNAGC 2 cut(s) 84, 453
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 163, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 125, 179
BseDI CCNNGG 2 cut(s) 163, 559
BseGI GGATG 2 cut(s) 178, 352
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 3 cut(s) 98, 411, 444
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 217, 494, 515
BseYI CCCAGC 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 631
BshFI GGCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 572
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 145, 398
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 145, 398
BsnI GGCC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 2 cut(s) 69, 76
Bsp19I CCATGG 1 cut(s) 559
BspACI CCGC 2 cut(s) 431, 624
BspANI GGCC 1 cut(s) 637
BspCNI CTCAG 3 cut(s) 97, 412, 445
BspFNI CGCG 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 163, 559
BssMI GATC 2 cut(s) 69, 76
BssT1I CCWWGG 2 cut(s) 163, 559
Bst2UI CCWGG 2 cut(s) 125, 179
Bst4CI ACNGT 1 cut(s) 552
Bst6I CTCTTC 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 6 cut(s) 90, 210, 214, 246, 362, 629
BstDEI CTNAG 6 cut(s) 31, 84, 230, 420, 453, 640
BstDSI CCRYGG 1 cut(s) 559
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 178, 352
BstFNI CGCG 1 cut(s) 631
BstKTI GATC 2 cut(s) 72, 79
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 69, 76
BstMWI GCNNNNNNNGC 3 cut(s) 311, 525, 660
BstNI CCWGG 2 cut(s) 125, 179
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 123, 177
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 3 cut(s) 217, 494, 515
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 178, 352
Cac8I GCNNGC 6 cut(s) 90, 210, 214, 246, 362, 629
Cfr13I GGNCC 2 cut(s) 127, 636
Csp6I GTAC 3 cut(s) 17, 283, 650
CviAII CATG 2 cut(s) 315, 560
CviQI GTAC 3 cut(s) 17, 283, 650
DdeI CTNAG 6 cut(s) 31, 84, 230, 420, 453, 640
DpnI GATC 2 cut(s) 71, 78
DpnII GATC 2 cut(s) 69, 76
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 570
Eco130I CCWWGG 2 cut(s) 163, 559
Eco24I GRGCYC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 123, 177
EcoT14I CCWWGG 2 cut(s) 163, 559
EcoT22I ATGCAT 2 cut(s) 316, 352
EcoT38I GRGCYC 1 cut(s) 572
ErhI CCWWGG 2 cut(s) 163, 559
FaeI CATG 2 cut(s) 318, 563
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 2 cut(s) 145, 398
FatI CATG 2 cut(s) 314, 559
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 4 cut(s) 206, 483, 529, 625
FokI GGATG 2 cut(s) 185, 359
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 4 cut(s) 206, 483, 529, 625
FspBI CTAG 3 cut(s) 149, 245, 664
GluI GCNGC 4 cut(s) 206, 483, 529, 625
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 1 cut(s) 637
Hin1II CATG 2 cut(s) 318, 563
HinfI GANTC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 41, 400, 574
Hpy188III TCNNGA 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 575, 610, 614
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 5 cut(s) 314, 328, 350, 364, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 525, 660
HpyF3I CTNAG 6 cut(s) 31, 84, 230, 420, 453, 640
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 318, 563
Kzo9I GATC 2 cut(s) 69, 76
LmnI GCTCC 1 cut(s) 575
LpnPI CCDG 8 cut(s) 34, 110, 137, 143, 164, 191, 377, 492
Lsp1109I GCAGC 3 cut(s) 217, 494, 515
LweI GCATC 3 cut(s) 301, 337, 359
MaeI CTAG 3 cut(s) 149, 245, 664
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 71, 78
MboI GATC 2 cut(s) 69, 76
MboII GAAGA 1 cut(s) 587
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 3 cut(s) 182, 259, 595
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 8 cut(s) 65, 93, 100, 163, 366, 394, 448, 571
Mph1103I ATGCAT 2 cut(s) 316, 352
MseI TTAA 5 cut(s) 189, 200, 258, 378, 468
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 125, 179
MvaI CCWGG 2 cut(s) 125, 179
MvnI CGCG 1 cut(s) 631
MwoI GCNNNNNNNGC 3 cut(s) 311, 525, 660
NcoI CCATGG 1 cut(s) 559
NdeII GATC 2 cut(s) 69, 76
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 318, 563
NlaIV GGNNCC 1 cut(s) 53
NsiI ATGCAT 2 cut(s) 316, 352
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 207, 484, 530, 626
Psp124BI GAGCTC 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 123, 177
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 2 cut(s) 123, 177
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 127, 636
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 18, 284, 651
RsaNI GTAC 3 cut(s) 17, 283, 650
RseI CAYNNNNRTG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 572
SaqAI TTAA 5 cut(s) 189, 200, 258, 378, 468
SatI GCNGC 4 cut(s) 206, 483, 529, 625
Sau3AI GATC 2 cut(s) 69, 76
Sau96I GGNCC 2 cut(s) 127, 636
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 125, 179
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 3 cut(s) 301, 337, 359
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 56, 278
SmoI CTYRAG 2 cut(s) 56, 278
Sse9I AATT 3 cut(s) 182, 259, 595
SsiI CCGC 2 cut(s) 431, 624
SspMI CTAG 3 cut(s) 149, 245, 664
SstI GAGCTC 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 123, 177
StyI CCWWGG 2 cut(s) 163, 559
TaaI ACNGT 1 cut(s) 552
TaiI ACGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 57, 142, 300
TasI AATT 3 cut(s) 182, 259, 595
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 5 cut(s) 189, 200, 258, 378, 468
Tru9I TTAA 5 cut(s) 189, 200, 258, 378, 468
TseI GCWGC 3 cut(s) 205, 482, 528
TspDTI ATGAA 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 2 cut(s) 182, 595
XceI RCATGY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 3 cut(s) 149, 245, 664
ZrmI AGTACT 1 cut(s) 284
Zsp2I ATGCAT 2 cut(s) 316, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.