RchiOBHm_Chr7g0191141

cysteine--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
9976519 .. 9979248
2730 bp
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UTR
Exon/CDS
Intron
PRQ17078

Sequence Viewer

Length: 1386 bp
ATGCTTGAAGAAGATTCGTCAAGTTCAACTACTCATCGCTGCCACAAAATCATTAATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCCCGTGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACGGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCATTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAACTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAAAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACCGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAATGATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGGTGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCTGCACATCTAATGTCGGAAAGGAAATAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATACTTGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACCACACAGGCCCCTCTGCCAACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGCTGGGTCAGAGATGTTCTAAAGTAG

Protein Analysis

461

Amino Acids

51.3

Weight (kDa)

5.24

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 13 - 207 1.7e-36 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1250
Acc36I ACCTGC 1 cut(s) 1250
AciI CCGC 1 cut(s) 1223
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 3 cut(s) 231, 435, 1258
AcuI CTGAAG 2 cut(s) 1016, 1352
AfaI GTAC 4 cut(s) 311, 709, 1078, 1152
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 5 cut(s) 8, 27, 821, 899, 1014
AjiI CACGTC 1 cut(s) 582
AjnI CCWGG 6 cut(s) 159, 325, 334, 543, 924, 1053
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 1341, 1373
AluBI AGCT 6 cut(s) 69, 244, 751, 1009, 1111, 1122
AluI AGCT 6 cut(s) 69, 244, 751, 1009, 1111, 1122
Alw21I GWGCWC 4 cut(s) 229, 574, 829, 861
Alw26I GTCTC 4 cut(s) 325, 607, 641, 761
Alw44I GTGCAC 2 cut(s) 225, 570
AoxI GGCC 4 cut(s) 86, 313, 341, 1303
ApaLI GTGCAC 2 cut(s) 225, 570
ApeKI GCWGC 7 cut(s) 39, 402, 868, 871, 943, 973, 1122
ApoI RAATTY 3 cut(s) 231, 435, 1258
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
AseI ATTAAT 2 cut(s) 54, 1229
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 5 cut(s) 87, 314, 323, 1266, 1304
AsuHPI GGTGA 2 cut(s) 308, 1231
AvaII GGWCC 2 cut(s) 323, 1266
BaeGI GKGCMC 2 cut(s) 229, 574
BalI TGGCCA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 4 cut(s) 229, 574, 829, 861
BbvI GCAGC 7 cut(s) 26, 414, 880, 883, 930, 985, 1109
BccI CCATC 3 cut(s) 161, 215, 264
BceAI ACGGC 2 cut(s) 170, 328
BciT130I CCWGG 6 cut(s) 161, 327, 336, 545, 926, 1055
BciVI GTATCC 1 cut(s) 1176
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 4 cut(s) 325, 607, 641, 761
BfmI CTRYAG 2 cut(s) 216, 726
BfuAI ACCTGC 1 cut(s) 1250
BfuI GTATCC 1 cut(s) 1176
BisI GCNGC 8 cut(s) 40, 403, 869, 872, 944, 974, 1123, 1224
BlsI GCNGC 8 cut(s) 41, 404, 870, 873, 945, 975, 1124, 1225
Bme1390I CCNGG 6 cut(s) 161, 327, 336, 545, 926, 1055
Bme18I GGWCC 2 cut(s) 323, 1266
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 5 cut(s) 87, 314, 323, 1266, 1304
BmiI GGNNCC 3 cut(s) 89, 324, 1306
BmrFI CCNGG 6 cut(s) 161, 327, 336, 545, 926, 1055
BmsI GCATC 6 cut(s) 163, 629, 658, 802, 887, 1210
BpiI GAAGAC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 224, 845
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 4 cut(s) 317, 326, 335, 543
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 6 cut(s) 161, 327, 336, 545, 926, 1055
BseDI CCNNGG 4 cut(s) 317, 326, 335, 543
BseGI GGATG 4 cut(s) 256, 538, 1096, 1225
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 977, 1224
BseRI GAGGAG 3 cut(s) 357, 705, 1196
BseSI GKGCMC 2 cut(s) 229, 574
BseXI GCAGC 7 cut(s) 26, 414, 880, 883, 930, 985, 1109
BseYI CCCAGC 1 cut(s) 1362
BsgI GTGCAG 1 cut(s) 1108
BshFI GGCC 4 cut(s) 88, 315, 343, 1305
BsiHKAI GWGCWC 4 cut(s) 229, 574, 829, 861
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 4 cut(s) 325, 607, 641, 761
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 4 cut(s) 88, 315, 343, 1305
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 4 cut(s) 229, 574, 829, 861
Bsp143I GATC 3 cut(s) 135, 196, 832
BspACI CCGC 1 cut(s) 1223
BspANI GGCC 4 cut(s) 88, 315, 343, 1305
BspCNI CTCAG 2 cut(s) 976, 1223
BspLI GGNNCC 3 cut(s) 89, 324, 1306
BspMI ACCTGC 1 cut(s) 1250
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 4 cut(s) 317, 326, 335, 543
BssMI GATC 3 cut(s) 135, 196, 832
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 6 cut(s) 161, 327, 336, 545, 926, 1055
Bst4CI ACNGT 5 cut(s) 601, 662, 904, 1076, 1155
Bst6I CTCTTC 2 cut(s) 992, 1053
BstAPI GCANNNNNTGC 2 cut(s) 356, 626
BstC8I GCNNGC 4 cut(s) 352, 400, 574, 876
BstDEI CTNAG 2 cut(s) 963, 1210
BstF5I GGATG 4 cut(s) 256, 538, 1096, 1225
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 3 cut(s) 138, 199, 835
BstMAI GTCTC 4 cut(s) 325, 607, 641, 761
BstMBI GATC 3 cut(s) 135, 196, 832
BstMWI GCNNNNNNNGC 7 cut(s) 182, 191, 250, 356, 626, 757, 865
BstNI CCWGG 6 cut(s) 161, 327, 336, 545, 926, 1055
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 6 cut(s) 159, 325, 334, 543, 924, 1053
BstSFI CTRYAG 2 cut(s) 216, 726
BstSLI GKGCMC 2 cut(s) 229, 574
BstV1I GCAGC 7 cut(s) 26, 414, 880, 883, 930, 985, 1109
BstV2I GAAGAC 1 cut(s) 576
BsuI GTATCC 1 cut(s) 1176
BsuRI GGCC 4 cut(s) 88, 315, 343, 1305
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 4 cut(s) 256, 538, 1096, 1225
BtsI GCAGTG 2 cut(s) 361, 412
BtsIMutI CAGTG 4 cut(s) 361, 412, 909, 992
BveI ACCTGC 1 cut(s) 1250
Cac8I GCNNGC 4 cut(s) 352, 400, 574, 876
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 5 cut(s) 87, 314, 323, 1266, 1304
Csp6I GTAC 4 cut(s) 310, 708, 1077, 1151
CviAII CATG 4 cut(s) 351, 395, 631, 1251
CviQI GTAC 4 cut(s) 310, 708, 1077, 1151
DdeI CTNAG 2 cut(s) 963, 1210
DpnI GATC 3 cut(s) 137, 198, 834
DpnII GATC 3 cut(s) 135, 196, 832
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 992, 1053
EarI CTCTTC 2 cut(s) 992, 1053
Eco130I CCWWGG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 325
Eco32I GATATC 2 cut(s) 61, 391
Eco47I GGWCC 2 cut(s) 323, 1266
Eco57I CTGAAG 2 cut(s) 1016, 1352
EcoO109I RGGNCCY 2 cut(s) 323, 1304
EcoRII CCWGG 6 cut(s) 159, 325, 334, 543, 924, 1053
EcoRV GATATC 2 cut(s) 61, 391
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 4 cut(s) 354, 398, 634, 1254
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 833, 865
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 350, 394, 630, 1250
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 8 cut(s) 40, 403, 869, 872, 944, 974, 1123, 1224
FokI GGATG 4 cut(s) 243, 525, 1103, 1232
Fsp4HI GCNGC 8 cut(s) 40, 403, 869, 872, 944, 974, 1123, 1224
GlaI GCGC 1 cut(s) 619
GluI GCNGC 8 cut(s) 40, 403, 869, 872, 944, 974, 1123, 1224
GsaI CCCAGC 1 cut(s) 1366
HaeIII GGCC 4 cut(s) 88, 315, 343, 1305
HapII CCGG 1 cut(s) 687
HhaI GCGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 354, 398, 634, 1254
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 5 cut(s) 14, 364, 500, 649, 769
HpaI GTTAAC 1 cut(s) 1294
HpaII CCGG 1 cut(s) 687
HphI GGTGA 2 cut(s) 308, 1231
Hpy166II GTNNAC 6 cut(s) 227, 572, 597, 893, 1266, 1294
Hpy188I TCNGA 8 cut(s) 100, 447, 499, 684, 1139, 1168, 1284, 1370
Hpy188III TCNNGA 3 cut(s) 107, 611, 830
Hpy8I GTNNAC 6 cut(s) 227, 572, 597, 893, 1266, 1294
Hpy99I CGWCG 1 cut(s) 1159
HpyAV CCTTC 3 cut(s) 83, 283, 962
HpyCH4III ACNGT 5 cut(s) 601, 662, 904, 1076, 1155
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 9 cut(s) 227, 350, 354, 359, 572, 655, 973, 1125, 1245
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 191, 250, 356, 626, 757, 865
HpyF3I CTNAG 2 cut(s) 963, 1210
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 4 cut(s) 354, 398, 634, 1254
HspAI GCGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 1294
Kzo9I GATC 3 cut(s) 135, 196, 832
LmnI GCTCC 3 cut(s) 448, 692, 865
Lsp1109I GCAGC 7 cut(s) 26, 414, 880, 883, 930, 985, 1109
LweI GCATC 6 cut(s) 163, 629, 658, 802, 887, 1210
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 4 cut(s) 407, 472, 715, 1200
MalI GATC 3 cut(s) 137, 198, 834
MboI GATC 3 cut(s) 135, 196, 832
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 4 cut(s) 229, 574, 829, 861
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 7 cut(s) 231, 304, 345, 435, 720, 1037, 1258
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 3 cut(s) 358, 643, 763
MmeI TCCRAC 3 cut(s) 186, 500, 1117
Mox20I TGGCCA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 343
MseI TTAA 6 cut(s) 54, 566, 851, 915, 1229, 1293
Msp20I TGGCCA 1 cut(s) 343
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 6 cut(s) 161, 327, 336, 545, 926, 1055
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 6 cut(s) 161, 327, 336, 545, 926, 1055
MwoI GCNNNNNNNGC 7 cut(s) 182, 191, 250, 356, 626, 757, 865
NdeII GATC 3 cut(s) 135, 196, 832
NlaIII CATG 4 cut(s) 354, 398, 634, 1254
NlaIV GGNNCC 3 cut(s) 89, 324, 1306
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 3 cut(s) 407, 472, 1200
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PaqCI CACCTGC 1 cut(s) 1250
PfeI GAWTC 2 cut(s) 14, 500
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 8 cut(s) 41, 404, 870, 873, 945, 975, 1124, 1225
PleI GAGTC 3 cut(s) 358, 643, 763
PpsI GAGTC 3 cut(s) 358, 643, 763
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 2 cut(s) 54, 1229
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 6 cut(s) 159, 325, 334, 543, 924, 1053
PspFI CCCAGC 1 cut(s) 1362
PspGI CCWGG 6 cut(s) 159, 325, 334, 543, 924, 1053
PspN4I GGNNCC 3 cut(s) 89, 324, 1306
PspPI GGNCC 5 cut(s) 87, 314, 323, 1266, 1304
PspPPI RGGWCCY 1 cut(s) 323
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
RsaI GTAC 4 cut(s) 311, 709, 1078, 1152
RsaNI GTAC 4 cut(s) 310, 708, 1077, 1151
SaqAI TTAA 6 cut(s) 54, 566, 851, 915, 1229, 1293
SatI GCNGC 8 cut(s) 40, 403, 869, 872, 944, 974, 1123, 1224
Sau3AI GATC 3 cut(s) 135, 196, 832
Sau96I GGNCC 5 cut(s) 87, 314, 323, 1266, 1304
SchI GAGTC 3 cut(s) 358, 643, 763
ScrFI CCNGG 6 cut(s) 161, 327, 336, 545, 926, 1055
SduI GDGCHC 4 cut(s) 229, 574, 829, 861
SfaNI GCATC 6 cut(s) 163, 629, 658, 802, 887, 1210
SfcI CTRYAG 2 cut(s) 216, 726
SinI GGWCC 2 cut(s) 323, 1266
SmlI CTYRAG 2 cut(s) 239, 860
SmoI CTYRAG 2 cut(s) 239, 860
SphI GCATGC 1 cut(s) 354
Sse9I AATT 7 cut(s) 231, 304, 345, 435, 720, 1037, 1258
SsiI CCGC 1 cut(s) 1223
StyD4I CCNGG 6 cut(s) 159, 325, 334, 543, 924, 1053
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 5 cut(s) 601, 662, 904, 1076, 1155
TaiI ACGT 1 cut(s) 584
TaqI TCGA 2 cut(s) 381, 1157
TasI AATT 7 cut(s) 231, 304, 345, 435, 720, 1037, 1258
TatI WGTACW 2 cut(s) 707, 1076
TauI GCSGC 1 cut(s) 1226
TfiI GAWTC 2 cut(s) 14, 500
Tru1I TTAA 6 cut(s) 54, 566, 851, 915, 1229, 1293
Tru9I TTAA 6 cut(s) 54, 566, 851, 915, 1229, 1293
TscAI CASTG 4 cut(s) 361, 412, 909, 999
TseFI GTSAC 3 cut(s) 407, 472, 1200
TseI GCWGC 7 cut(s) 39, 402, 868, 871, 943, 973, 1122
Tsp45I GTSAC 3 cut(s) 407, 472, 1200
TspDTI ATGAA 2 cut(s) 821, 875
TspRI CASTG 4 cut(s) 361, 412, 909, 999
VneI GTGCAC 2 cut(s) 225, 570
VpaK11BI GGWCC 2 cut(s) 323, 1266
VspI ATTAAT 2 cut(s) 54, 1229
XapI RAATTY 3 cut(s) 231, 435, 1258
XceI RCATGY 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.